Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3052 atgAATAAGAGTGGGGGAGGAGAGATGAGTAAGTGGCCGTTCACAATGTCTCAGTGGCAGGAATTGGAACATCAAGCATTGATTTACAAGTACATGGTGGCTGGTCTTCCTGTGCCTCCTGATCTCGTCATTCCCATTCAGAACAGCTTCCATTCCATTTCCCAAACCTTCTTGCACCATCCCTCTGCCACCATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCCTACCCAGACTCCAAGTACTGTGAGCGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACAGTCATCATCCACTGTGACATCACTGACTGTAACTGCTGCTGGCAGCAGCAGCAGTGCAACTGGAAATTTCCAGAACCTTACCACCACAAATGCATATGGTAATCCCCAAGGGACTGGTTCTGGAGCAGACCAAACCCACTATCATCTGGATTCCATTCCCTATGGTATCCCAAGTAAAGAATATAGGTATTTTCAAGGACCTAAATCTGAGGGTGGTGAACATAGTTTCTTGTCCAAAACTTTAGGAAGCAACAAGGTTCTTCGCATGGAGTCACAGCTAGATAACACTTTGATGCCAACCAGAGTTGCCTCGTTCTCTACTTTGAGATCAAATAATAATTCCATGTTGCAGGGTGATTATCTCCAGCCTTCTTTTTTATCTAGTGAATATGCCTCAGGAGAAGCTGTGAAGCAAGAGGGTCAGTCCCTTCGACCTTTCTTTGATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAGACAACTTTCTCCACCACTCACCTCTCAATATCCATTCCTATGTCGTCATCAAATTTCTCAGCAACTAGCTCTCAATCCCCACATGGTGAGATTTAA 972 0.463 MNKSGGGEMSKWPFTMSQWQELEHQALIYKYMVAGLPVPPDLVIPIQNSFHSISQTFLHHPSATMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSLTVTAAGSSSSATGNFQNLTTTNAYGNPQGTGSGADQTHYHLDSIPYGIPSKEYRYFQGPKSEGGEHSFLSKTLGSNKVLRMESQLDNTLMPTRVASFSTLRSNNNSMLQGDYLQPSFLSSEYASGEAVKQEGQSLRPFFDEWPKSRESWSGLEDERSNQTTFSTTHLSISIPMSSSNFSATSSQSPHGEI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3052 323 MobiDBLite consensus disorder prediction 282 301 - -
Ssu2g3052 323 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu2g3052 323 MobiDBLite consensus disorder prediction 108 146 - -
Ssu2g3052 323 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu2g3052 323 MobiDBLite consensus disorder prediction 117 146 - -
Ssu2g3052 323 MobiDBLite consensus disorder prediction 287 301 - -
Ssu2g3052 323 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu2g3052 323 Pfam WRC 77 119 IPR014977 -
Ssu2g3052 323 PANTHER GROWTH-REGULATING FACTOR 5 10 315 - -
Ssu2g3052 323 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Ssu2g3052 323 PANTHER - 10 315 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3052 Ssu-Chr2 92178315 92181935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3052 1 119 GRF Transcription Factor Family AT3G13960 58.678 2.98e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu2g3052 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3052 - - gmx:100797906 568.54