Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3047 ATGGGGGGTGGAGGAGGTGCAATTGGGGTGACAGGTCTCAATGAAGAAGATGATGTTGGAAAGAATGAAGATGAAAACAGGTGGCCACCATGGCTTCAGCCACTTCTCCAAACAAGCTTCTTTGTTCAATGCAAAGTCCACGCAGATTCCCACAAAAGTGAATGCAATATGTATTGCTTGGACTGTATGAATGGAGCCCTTTGCTCTGCCTGTCTTGCTTCTCACAGAGAACACACAGCTATTCAGATAAGGAGATCTTCATACCATGATGTGATAAGGGTGTCCGAGATACAGAAATTTCTGGACATAACAGGGGTCCAAACTTACATTATAAACAGTGCCAAGATTGTGTTTTTGAATGAAAGACCTCAGCCTAGGCCTGGCAAAGGAGTCACCAACACCTGCCAAGTCTGTGAACGCAGCCTTCTTGATTCATTCAGTTTCTGTTCTCTTGGTTGtaagaTAGTTGGAACCTCCAAGAAGTTCCGGAAGAAGAAAATGTTAGCTGAGACAGATGGGTCTGATGGTGAAGAATCAATAAATGGCATTATCAATGAAAGTGCAAGAAACAAACTCCAGAGCTTCACGCCGTCAACACCGCCACCAACAGTGGTAAATTACAGGACTGCTAAGAGGAGAAAGGGAGTCCCACACAGAGCTCCAATGGGGGGTGGCCTTATTGTAGAATACTACTAA 696 0.4454 MGGGGGAIGVTGLNEEDDVGKNEDENRWPPWLQPLLQTSFFVQCKVHADSHKSECNMYCLDCMNGALCSACLASHREHTAIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKKFRKKKMLAETDGSDGEESINGIINESARNKLQSFTPSTPPPTVVNYRTAKRRKGVPHRAPMGGGLIVEYY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3047 231 Pfam PLATZ transcription factor 84 155 IPR006734 -
Ssu2g3047 231 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 225 - -
Ssu2g3047 231 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 225 - -
Ssu2g3047 231 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3047 Ssu-Chr2 92123864 92125741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu2g3047 PLATZ 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3047 - - gmx:100796834 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3165 3 87698454 87700050 Ssu2g3047 2 92123864 92125741 ECH
Ssu2g3047 2 92123864 92125741 Ssu2g3047 2 92123864 92125741 ECH