Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3041 ATGAGAACACCAAGCAGTGATGATAGTGGTTTGAAGAAGGGACCTTGGAGCCCAGAAGAGGATAAAATATTAGTGGATTACATTCAGAAACATGGCCATGGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGGTTGAACAGGTGTGGAAAGAGTTGCAGACTAAGGTGGACTAATTACCTCAGGCCTGATATCAAAAGAGGAAAATTCTCTGATGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGggaataaGTGGGCGGCTATAGCATCTCATCTGCCAGGGAGGACTGATAATGAAATCAAGAATTTCTGGAACACCCATTTAAAGAAAAAGCTTTTGCAAATGGGGTTAGACCCAGTGACCCACCGTCCAAGAACTGATCACCTAAACCTTCTTAGCAATCTACAACAGATATTGGCTGCTGCAAAAATTGTGAGCAGTTTCACAAACCCTTGTGACATAAATAATGCTCTAAGGCTACAGTCAGATGCCACACAACTAGCCAAACTCCACTTGTTGCAAAACATATTTCAAGTCATGGGTACCACTCCTTCTCCTTCCTCAAACTCAGACCCACTCAATCCTTTTGGATCATTAAACTCACTGCCAGATGGTTTATTAAATGATGTTTTAGGGTTGAATAACTTTAATCTCCAAAACCTTTATGATGGTTCAGTTggtttttcttctcaaatccaGCCCAATATTTTCCAAAACTTTGAGGCCACTCAGCAGCCAACACAAGCTGGTAGGAATCAGCACTTGAATGGTGGCAGAAATAGTAGTTTCATGGAATCTCAGAAGTTTGATGAGCAATTTGGTTCCACAAATGCTGACCCCTCATCATCAAATTCGCTTCCAAATCTGGTTTCTGCCTCACCTGAACGTTCCCCAGTCAAGGAAGCAGAAAACATGGTAAACTCAAAGGAGTGTTCTAACTCTAACCCTTGTTCCACCACCTTTGAGTTAACGTGGGGAGATTTCATGGATGAGGAAGCAACCGAGACTTGTTGGAAAGGATTCATAGACCAACATTCTAACCAGCCATGGTCGACAGTCCCATGA 1074 0.4171 MRTPSSDDSGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRTDHLNLLSNLQQILAAAKIVSSFTNPCDINNALRLQSDATQLAKLHLLQNIFQVMGTTPSPSSNSDPLNPFGSLNSLPDGLLNDVLGLNNFNLQNLYDGSVGFSSQIQPNIFQNFEATQQPTQAGRNQHLNGGRNSSFMESQKFDEQFGSTNADPSSSNSLPNLVSASPERSPVKEAENMVNSKECSNSNPCSTTFELTWGDFMDEEATETCWKGFIDQHSNQPWSTVP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3041 357 PANTHER MYB TRANSCRIPTION FACTOR 1 348 - -
Ssu2g3041 357 Gene3D - 12 65 - -
Ssu2g3041 357 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu2g3041 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ssu2g3041 357 MobiDBLite consensus disorder prediction 275 316 - -
Ssu2g3041 357 CDD SANT 68 111 IPR001005 -
Ssu2g3041 357 SMART sant 12 62 IPR001005 -
Ssu2g3041 357 SMART sant 65 113 IPR001005 -
Ssu2g3041 357 Gene3D - 68 115 - -
Ssu2g3041 357 CDD SANT 15 60 IPR001005 -
Ssu2g3041 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 348 - -
Ssu2g3041 357 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Ssu2g3041 357 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu2g3041 357 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Ssu2g3041 357 MobiDBLite consensus disorder prediction 275 295 - -
Ssu2g3041 357 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu2g3041 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3041 Ssu-Chr2 92031094 92032962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3041 2 346 MYB Transcription Factor Family AT5G16770 47.123 4.07e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g3041 Myb_DNA-binding 9.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3041 K09422 - gmx:102660452 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3041 2 92031094 92032962 Ssu2g3041 2 92031094 92032962 ECH