Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3037 ATGGAGGGAGCATCGTGGAATAGCGTTTGTGTGGCACCGTTTCTGAGCAAGACCTATGACATGGTCGACGATCCCTCCACCGACTCGGTGGTGTCGTGGGCCGATAACAACAACTCCTTTGTTGTCTGGAACGTTCCCCAATTCGCCACAGACATCTTGCCTAAGCATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTCAGAAAGGTTGACCCTGATCGATGGGAATTTGCAAATGAAGGATTTTTAAGAGgtgaaaaacaacttttaaaaactatcagTAGGCGGAAATCTGCTCATGTAAATGGTAGTCAACAACCATCTCAAGTGCATAACGCACCTGTTCGAGCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTGGCAAAGGCCATGCAGAGCCCAGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAGACATATCACTGGGGGCAATAAAAAGAGGAGGCTCCACAGGCAAGAAGAAGATAGTTTAGCCACCGAGGATCTCCATAATGCTCTTGATGGACATATTGTTAAGTACCAGAGTTCCATAAACGAGGCTGCAAAAGCATTATTTCGTCAGATATTGCAAATAAACAACTCTACAACAACAGAATCATCAATTAAGAACCCTGATGTTTTCCTTATTGACGATGTTCCTTCTGCCATTGCATTAGATAGTAGTAGTTCATCCACTCAGGTTTCTAATGTGTCCCTTTCTATGGTTCCACCTGTTTCTGAGCTGACATGTATGGAAGTAGAATCACAGTTTCCTGTCAATTGTATGCCCACTAGCATATCTGAGGTGCAATCTTCACCTGCTGTTTTGGGTTTTTGTAAAAGTCAAGGGATGGAGACAGAAAGCAGTTTAGTGAATCATGATCTGAATGTTGTGGAGGCTGGTACTAGGAACATGGGGGAGATAGATATGATGCCAACTGTTTTAGATGGGACACACACTGTAGAAGCTGATCATTTTTCACCTGATGCAGATGGAATTTCTAAACTTCCAGGAATCGATGATGAATTCTGGGAACTGTTTTTCAGGCCAAGCCCACTTACAGGAGACACAGAGGAAACTAAATGCAGCTCTCTAGGATGTGGTTTGACTGAAGACCAGGATTTTCCTCCAGAAAGGGAAAATAAGCAGGAAAAAATTGATAAGATACAGCATGTTGACCATCTTACTCAACAGATGGGACTTCTTGCTTCGAAGTCCTAA 1410 0.4255 MEGASWNSVCVAPFLSKTYDMVDDPSTDSVVSWADNNNSFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKTISRRKSAHVNGSQQPSQVHNAPVRACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNRHITGGNKKRRLHRQEEDSLATEDLHNALDGHIVKYQSSINEAAKALFRQILQINNSTTTESSIKNPDVFLIDDVPSAIALDSSSSSTQVSNVSLSMVPPVSELTCMEVESQFPVNCMPTSISEVQSSPAVLGFCKSQGMETESSLVNHDLNVVEAGTRNMGEIDMMPTVLDGTHTVEADHFSPDADGISKLPGIDDEFWELFFRPSPLTGDTEETKCSSLGCGLTEDQDFPPERENKQEKIDKIQHVDHLTQQMGLLASKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3037 469 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 441 IPR027725 -
Ssu2g3037 469 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 5 441 - -
Ssu2g3037 469 Coils Coil 130 157 - -
Ssu2g3037 469 MobiDBLite consensus disorder prediction 204 225 - -
Ssu2g3037 469 Gene3D - 7 104 IPR036388 -
Ssu2g3037 469 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g3037 469 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3037 Ssu-Chr2 91981855 91984615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3037 10 469 HSF AT5G16820 52.553 2.53e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu2g3037 HSF_DNA-bind 8.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3037 K09419 - gmx:100793665 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3037 2 91981855 91984615 Ssu2g3037 2 91981855 91984615 ECH
Ssu2g3037 2 91981855 91984615 Ssu7g0683 7 13849690 13851290 PCT