Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3034 ATGATAACGGTAGCTCCTTCTGTTGACACCAAAGAGGTGCCAGCCCCTCCAGCTGAGCAAAACAAAGTGTGTGTTCCCGAAACTACCCatatattcaaatcaaaattaccaGACATACCCATCTCCAACCACCTACCCCTCCACACCTACTGCTTCGAAAAACTCTCCGAATTCGCGGACCGCCCCTGCCTCATCGTCGGCCCCGCCGCGAAAACCTACACCTACGCCGAGACGCACCTCGTTTGCCGGAAAATCGCCGCCGGACTATCCAACCTCGGAATCCGCAAAGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCTTCTCCTTCCTCGCCGCCTCCATGATCGGCGCCGTCGCCACGACCACGAACCCGTTCTACACCGCCGCGGAGATCTTCAAGCAGTTCGCCGCCTCCAGGGCGAAGCTCATCATCACGCAGGCAATGTACGTGGACAAGCTCCGCCACCTCGAGGAGACCAAACTCGGCGAGGACTTCAGGGTGGTCACCATCGACGACCCGCCGGAGAACTGCCTGCACTTCTCGGTGCTCTCGGAGGGGAACGAGAACGAGGTGCCGGAGGTGGAGATCAGCCCGGACGACGCGGTGGCGCTGCCGTTTTCCTCCGGCACGACGGGGCTGCCGAAGGGAGTGGTCCTCACACACAAGAGCCTGACCACCAGCGTGGCGCAGCAGGTGGACGGAGAGAACCCTAACCTCCACCTCACCACCGAGGACGTGCTCCTCTGCGTGCTTCCTTTGTTTCACATATTCTCCCTCAACAGCGTGCTGCTGTGCGCGCTCAGGGCCGGGAGTGCCGTTTTGTTGATGCACAAGTTCGAGATTGGGACGCTGCTGGAGCTGATACAGCGCCACCGCGTGTCGGTGGCCATGGTCGTGCCACCGCTGGTGCTGGCGCTGGCCAAGAATCCGATGGTGGCGGACTTTGACCTCAGCTCGATACGGTTGGTGCTGTCGGGGGCTGCACCCTTGGGGAAAGAGCTCGAGGAGGCTCTACGCGACAGGGTGCCTCAGGCTGTTTTGGGACAGGGGTACGGGATGACAGAAGCAGGACCGGTGCTGTCCATGTGCTTAGGCTTCGCAAAGCAACCATTCCCAACAAAGTCAGGCTCTTGTGGCACTGTGGTTAGAAATGCAGAGCTCAAGGTTGTTGACCCTGAAACTGGTCGTTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGGCAACAAATCATGAAAGGATATCTGAACGATGAGAATGCGACAGCATCGACCATCGATGCAGAGGGTTGGCTTCACACCGGTGACGTTGGCTTtgtagatgatgatgatgagattTTCATTGTTGACAGGGTGAAAGAACTTATCAAATATAAAGGCTTccagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTTGTGAGATCAAATGGATTTGATCTAACTGAAGAGGCTGTAAAATTGTTTATAGCTAAACAGGTAGTGTTTTATAAAAGACTGCACAAGGTTTATTTTGTTCATGCTATTCCCAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAACGGTCGCCACCCCGACCCCTTGA 1704 0.5434 MITVAPSVDTKEVPAPPAEQNKVCVPETTHIFKSKLPDIPISNHLPLHTYCFEKLSEFADRPCLIVGPAAKTYTYAETHLVCRKIAAGLSNLGIRKGDVVMILLQNSAEFVFSFLAASMIGAVATTTNPFYTAAEIFKQFAASRAKLIITQAMYVDKLRHLEETKLGEDFRVVTIDDPPENCLHFSVLSEGNENEVPEVEISPDDAVALPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGENPNLHLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRDRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDENATASTIDAEGWLHTGDVGFVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKLFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETVATPTP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3034 567 Pfam AMP-binding enzyme C-terminal domain 474 549 IPR025110 -
Ssu2g3034 567 CDD 4CL 41 555 - -
Ssu2g3034 567 Pfam AMP-binding enzyme 55 465 IPR000873 -
Ssu2g3034 567 PANTHER 4-COUMARATE--COA LIGASE 3 30 558 - -
Ssu2g3034 567 Gene3D - 460 563 IPR045851 -
Ssu2g3034 567 Gene3D - 23 459 IPR042099 -
Ssu2g3034 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 558 - -
Ssu2g3034 567 ProSitePatterns Putative AMP-binding domain signature. 209 220 IPR020845 -
Ssu2g3034 567 SUPERFAMILY Acetyl-CoA synthetase-like 44 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3034 Ssu-Chr2 91908847 91914788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3034 26 472 Monolignol Biosynthesis Gene Families AT1G65060 73.333 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3034 K01904 - gmx:547492 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3034 2 91908847 91914788 Ssu2g3034 2 91908847 91914788 ECH