Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3030 ATGGGAACACAACCCCAGCAAACATTTCGggaggaagaagaggaggagCTGCCAGGCCGTGGAACTACGGTCTCAGGTCAATCAATGTCAACAAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACGCCAGCTAGTGATAACACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCtagcaagaagaaaaagaggggCCAACGTGCTGTTGGAGGCGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATGGTGTTTCAACTCCTGATCagCAACAATATGACGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTctaaggataaaaaagaaatacaatggAAGGGTCTTCCTCGTACTAGTCTAAGCGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTAAGAAatagaattgaaaagaaagcaGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGTAATGAGCAATTATATAGCTCAGGAAATGCTCCCATTGGAGGTGTATCTTTGCCTTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAGTTTTGTGAGAGATCTCAGAATGATAATACAACAGACAATCCTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGCTTGTACCATGCACAGGTTCCTGCTTCAGTTTCAAACCCTCTAATTAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTGA 1029 0.4033 MGTQPQQTFREEEEEELPGRGTTVSGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPIGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDNPTDGGEGSSMSGLYHAQVPASVSNPLIRPPSSPPLPGILKARVKNEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3030 342 MobiDBLite consensus disorder prediction 21 55 - -
Ssu2g3030 342 CDD DP_DD 178 281 IPR014889 -
Ssu2g3030 342 Gene3D - 85 178 IPR036388 -
Ssu2g3030 342 MobiDBLite consensus disorder prediction 287 302 - -
Ssu2g3030 342 Pfam Transcription factor DP 181 296 IPR014889 -
Ssu2g3030 342 Gene3D Transcription factor DP 179 301 IPR038168 -
Ssu2g3030 342 Coils Coil 189 223 - -
Ssu2g3030 342 SUPERFAMILY E2F-DP heterodimerization region 180 296 IPR037241 -
Ssu2g3030 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Ssu2g3030 342 PANTHER TRANSCRIPTION FACTOR DP 17 342 IPR015648 GO:0005667|GO:0051726
Ssu2g3030 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Ssu2g3030 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Ssu2g3030 342 SMART DP_2 180 340 IPR014889 -
Ssu2g3030 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Ssu2g3030 342 MobiDBLite consensus disorder prediction 287 342 - -
Ssu2g3030 342 MobiDBLite consensus disorder prediction 1 93 - -
Ssu2g3030 342 PANTHER TRANSCRIPTION FACTOR DP 17 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3030 Ssu-Chr2 91870753 91879897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3030 91 289 E2F-DP Transcription Factor Family AT5G02470 55.500 1.67e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu2g3030 DP 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3030 K04683 - gmx:100797603 594.734