Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3027 ATGACGACACCATCTTCCTCGTCAGCTCCGCAATCGCAATTAGCCTATTCCAACCCCTCGTACTTCCCCGTGCCCTTTCATCTACAGCAACCTGCAACCACTCACTACGCTGCACCCTACGTTGCCGCTCCGTCCGTGCAACCTCCCATTGTTGGTTCCCATACGCCGGAGCCGGTGGCTGGCATATACTCCACCGTGCCACAATATCAGGCGCAACAGTTATTTGAGAGGGATGCACAGATAATAACACCGGAGGCTCTTGAGAATGTTAAGGCGGCGATTGCGAGCAGCGATGTTGAGCACAAAGCTGATACCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAATCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGCGATCTTGGCAATGAAGTGAATGATGATGTTCTTTCGAAAGCATTTTCACGATTCCCTTCCTTTAACTTGGCACGAGTTGTCAGAGATAAGCGAACTGGTAAAACAAAGGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGGCTGATAAAACTATGCAAGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAAAAACAGAAGAATCACATTCAAAAGAAACTGAAACTGCCAAGGAAAGGTGTGCTGCACAAGTGA 723 0.4772 MTTPSSSSAPQSQLAYSNPSYFPVPFHLQQPATTHYAAPYVAAPSVQPPIVGSHTPEPVAGIYSTVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKADTKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRLIKLCKSKWKERTDYEALEKQKNHIQKKLKLPRKGVLHK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3027 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Ssu2g3027 240 CDD RRM_RBM42 126 208 IPR034215 -
Ssu2g3027 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 240 - -
Ssu2g3027 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Ssu2g3027 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Ssu2g3027 240 SUPERFAMILY RNA-binding domain, RBD 115 212 IPR035979 GO:0003676
Ssu2g3027 240 PANTHER RNA-BINDING PROTEIN 42-LIKE 27 240 - -
Ssu2g3027 240 Gene3D - 80 223 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3027 Ssu-Chr2 91846609 91848228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3027 134 221 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 4.73e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3027 K25079 - gmx:100807693 438.343