Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3024 ATGAGGCTGAAGACATATGCGGGTTTTAGTTTGATTGCAACTTTGGCTATTATATATCATGCATTCAACAGTAGGGGCCAGTTTTATCCGGCAATGGTGTATCTGTCAACCTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACGAAGAAGGTATTCTTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCATGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCGATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATTGAGACCACTCCTTCTGTGCCCATGTTGTCCCATATTCGAATTGTATCTTTTATGggtttccttcttcttctggATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCGACTACAACAGtgtcaatttttgttaaatatctTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTTGAACTCATCAGGGACTTGCTTCACTTATCTATGTATATGTGCttctttcttgtaatttttgtAAACTATGGTATTCCCTTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGTGTTGCAGATTACATACGATATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTGCAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTGCAGCTGTAGGGCAGCAAGGATCACAGTCAGATGGTCATCGACAGGGAACTGGGACTGGGACTGGCACTGGAAGTACAGCTCAAGCTGAGGCTACTGATAGTTTGAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTATCCCTCTGCAAATTCTTTTGTATGCTCTCCTGGGTACACTCTTTATCCCCTGGTTCAAATACCTATGGCGGAATCTACTAATACCAACCGTAATGGAGAGCCAACTTCCAGTGAACAAGCACTAAGGCAGTTTCTTATCCCTGGTGGACCAACAAATGTATCCTTTCCTCCAATGCAACACGCCCATTTTCTACCTTCCCAAACACATGCAGCCCCTGTGAATTATGGAGAGGGGGAAAATGATCCAAATATCCCAAGCTCTCAGCTGGAAGCTCACGAAAAACTTCTTCAATGCCAAATTCAGATCCTGCAAAATCAGCTCGAGATTCTGCAGAGGACAAAGGCTGACAGAAGTGTAGATGAGGGTACATCGTCATCAGATAGCAGAGGCAAGAGTATCATTTCCTCGTCCTCTGAATCTGGTCATGGTTATCGTGAGGAGATTCAAGATGGAAAAGCATAA 1656 0.4251 MRLKTYAGFSLIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGQQGSQSDGHRQGTGTGTGTGSTAQAEATDSLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLYPLVQIPMAESTNTNRNGEPTSSEQALRQFLIPGGPTNVSFPPMQHAHFLPSQTHAAPVNYGEGENDPNIPSSQLEAHEKLLQCQIQILQNQLEILQRTKADRSVDEGTSSSDSRGKSIISSSSESGHGYREEIQDGKA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3024 551 CDD RING-H2_synoviolin 288 329 - -
Ssu2g3024 551 PANTHER RING ZINC FINGER PROTEIN 1 382 - -
Ssu2g3024 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Ssu2g3024 551 MobiDBLite consensus disorder prediction 339 376 - -
Ssu2g3024 551 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Ssu2g3024 551 MobiDBLite consensus disorder prediction 511 551 - -
Ssu2g3024 551 MobiDBLite consensus disorder prediction 523 540 - -
Ssu2g3024 551 SMART ring_2 291 328 IPR001841 -
Ssu2g3024 551 SUPERFAMILY RING/U-box 271 335 - -
Ssu2g3024 551 Pfam Ring finger domain 290 329 IPR001841 -
Ssu2g3024 551 Coils Coil 491 511 - -
Ssu2g3024 551 PANTHER - 1 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3024 Ssu-Chr2 91823029 91829724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3024 1 535 C3H Transcription Factor Family AT3G16090 65.428 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3024 K10601 - gmx:100816441 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3024 2 91823029 91829724 Ssu2g3024 2 91823029 91829724 ECH