Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3015 ATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGAAGGAGAGTTCAAGAGTGGCAAGAGTTAAggaggaagaaggaagaagcAGAAAGAGAAAAGCATGGTGAAGCAAGTGCTAATGAACCCGAGTCTGGAAAGACCTGGACGCTTGAAGGGGAATCCGATGATGAAGAAGGACCAGGTACTGGGAAGCAGGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATAAGGAACCTAAGGATGCAATGGTGGTAGATGCTGATAATGGGACAGTTGCATCTGATTTACAGGATGGAACTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTgaagttgaaaaactaaaaaatgctGTGACATCGTTACTTTCTGATAAAGCTGTTGACTTAAAACCCAAAGATAAAGGGAATGAGCAAAGTCGTGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAATTGAGAGGGATCCATtggatgaagatgatgatgagtTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTAGTTGACCACTCAAAGATCAACTATGAACcattcaagaaatatttttatattgaagtGAAGGAGATCTCGAAGATGACTCCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCAACAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGTTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAACCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCAcagtgatataaaaaaatttgctaaGGTACTGGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGCGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGTCCGGATCGTCAAACGGTTCTGTTCTCTGCTACTTTCCCCCGTCAAGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTAGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATACTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCACTCACAGGAGAAATGTGACAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACcgtgaatccacaatatctgatTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTTAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTGTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAGGCCTTGGAACTATCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTggctttaaatttaatgaagagGAAGATGAGGTGAGGAGAGCAGCTAAGAAAGCGCAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATtctgaagatgaagatgaaggtATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACTAAAGTGAATTCCCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTTATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTCCAACAGCCTTGCCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACTTGCAGCACAACTTGGCAAAAATACAATCAGAAGCATTACCAGAGCATTACGAGGCTGAATTGGAAATAAATGATTTCCCCCAGAATGCCCGCTGGAAAGTTACACACAAGGAAACTTTAGGCCCTATTTCTGAATGGACCGGAGCTGCCATTACCACCAGGGGGCAGTTTTTTCCACCTGGCAAAGTCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCAACTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAGCCGGGCAAATACTCTGTTGTGTAA 2715 0.4162 MEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGPGTGKQDTGMDVDEDDKPADKEPKDAMVVDADNGTVASDLQDGTAGAPADEEIDPLDAFMNSMVLPEVEKLKNAVTSLLSDKAVDLKPKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEIERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKINYEPFKKYFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWQQTGLASKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFICEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNSPALPTPISAAQLISNGGLPVSLPAVLGLQTPTALPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3015 904 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 421 429 IPR000629 -
Ssu2g3015 904 Coils Coil 5 35 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 1 43 - -
Ssu2g3015 904 SMART helicmild6 527 608 IPR001650 -
Ssu2g3015 904 Coils Coil 868 891 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 181 196 - -
Ssu2g3015 904 CDD DEADc_DDX46 255 476 - -
Ssu2g3015 904 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 3 722 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 1 115 - -
Ssu2g3015 904 SMART ultradead3 285 490 IPR014001 -
Ssu2g3015 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 475 IPR014001 -
Ssu2g3015 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 647 IPR001650 -
Ssu2g3015 904 Pfam Helicase conserved C-terminal domain 500 608 IPR001650 -
Ssu2g3015 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 478 IPR027417 -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 682 713 - -
Ssu2g3015 904 Pfam DEAD/DEAH box helicase 291 462 IPR011545 GO:0003676|GO:0005524
Ssu2g3015 904 Gene3D - 476 651 IPR027417 -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 141 199 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 145 159 - -
Ssu2g3015 904 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 266 294 IPR014014 GO:0003724
Ssu2g3015 904 Gene3D - 218 475 IPR027417 -
Ssu2g3015 904 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 722 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 682 696 - -
Ssu2g3015 904 MobiDBLite consensus disorder prediction 51 90 - -
Ssu2g3015 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 648 IPR027417 -
Ssu2g3015 904 CDD SF2_C_DEAD 487 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3015 Ssu-Chr2 91679918 91682632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3015 253 628 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 6.22e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3015 K12811 - gmx:100784306 1604.73