Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2998 ATGTGGCATGCAGGTTTTCAACTTTGTGGACTTGGGGACAAAGCCGTTCGCCTGTTTGCACATATGTACTGCAATGGAATTGGGTTTGACCGTGCCACGCTACTTAGTGTCTTTTCTTCACTGAATGAATGCGGTGCTTTTGATGACATTGAGATACATCTCAGGAAATGTTTTCAATTACACTGTCTCGCTATTAAAAGCGGTCTTATTTCAGAAATTGAAGTGGTAACTGCATTGATAAAATCCTATGCAAATCTTGGAGGACATATTTCTGACTGTTATAGAATCTTCCTGGATACAAGTAGCCAACTGGATATTGTGTCATGGACCGCTCTTATTTCTGTGTTTGCAGAACGGGATCCTGAGCAGGCTTTCCTCCTTTTTTGTCAACTTCATCGTCAAAATTATTTGCCAGACTGGTATACATTCTCAATTGCCTTAAAAGCTTGTGCATACTTTGTGACTGAGCAACATGCCATGACTATTCACtcacaagtaattaaaaaagGGTTTCACAAAGATGCTGTTCTTTGTAATGCCTTGATACATGCTTATGCGAGGTGTGGCTCCTTAGCTTTGTCTGAacaagtatttgataaaatggGCTGCCGTGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATGCACGGGCAAGCTAAAGATGCACTGGAGCTCTTCCAGCAAATGAATTTCTGTCCAGATTCTGCAACCTTTGTGGCGCTTCTCTCTGCTTGCAGTCATGTTGGACTTGTTGATGAAGGAGTGAAATTGTTTAAATCTATGCCTAATGATCACGGTATTGTTCCTCAACTAGATCACTATTCCTGCATGGTTGACCTGTATGGACGAGCTGGGAAGATATTTGAGGCTGAGGAGTTGATACGTAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCACGGTGAGACTCGCTTGGCCAAATTAGCAGCTGATAAATTTAAAGAGTTAGAACCTAAAAATTCGTTGGGATATGTACAAATGTCAAACTATATATTCCTCTGGCGGTAG 1065 0.4019 MWHAGFQLCGLGDKAVRLFAHMYCNGIGFDRATLLSVFSSLNECGAFDDIEIHLRKCFQLHCLAIKSGLISEIEVVTALIKSYANLGGHISDCYRIFLDTSSQLDIVSWTALISVFAERDPEQAFLLFCQLHRQNYLPDWYTFSIALKACAYFVTEQHAMTIHSQVIKKGFHKDAVLCNALIHAYARCGSLALSEQVFDKMGCRDLVSWNSMLKSYAMHGQAKDALELFQQMNFCPDSATFVALLSACSHVGLVDEGVKLFKSMPNDHGIVPQLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKELEPKNSLGYVQMSNYIFLWR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2998 354 Pfam Pentatricopeptide repeat domain 165 201 IPR002885 -
Ssu2g2998 354 Gene3D Tetratricopeptide repeat domain 233 351 IPR011990 GO:0005515
Ssu2g2998 354 Gene3D Tetratricopeptide repeat domain 4 151 IPR011990 GO:0005515
Ssu2g2998 354 PANTHER - 6 349 - -
Ssu2g2998 354 Pfam PPR repeat family 105 151 IPR002885 -
Ssu2g2998 354 Pfam PPR repeat 240 265 IPR002885 -
Ssu2g2998 354 Pfam PPR repeat 276 301 IPR002885 -
Ssu2g2998 354 Pfam PPR repeat 207 232 IPR002885 -
Ssu2g2998 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Ssu2g2998 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Ssu2g2998 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 272 IPR002885 -
Ssu2g2998 354 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 6 349 - -
Ssu2g2998 354 Gene3D Tetratricopeptide repeat domain 152 232 IPR011990 GO:0005515
Ssu2g2998 354 TIGRFAM PPR: pentatricopeptide repeat domain 176 205 IPR002885 -
Ssu2g2998 354 TIGRFAM PPR: pentatricopeptide repeat domain 277 300 IPR002885 -
Ssu2g2998 354 TIGRFAM PPR: pentatricopeptide repeat domain 207 232 IPR002885 -
Ssu2g2998 354 TIGRFAM PPR: pentatricopeptide repeat domain 240 272 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2998 Ssu-Chr2 91562513 91563761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2998 105 351 Glycoside Hydrolase AT3G49170 24.031 3.62e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2998 - - gmx:100799117 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2998 2 91562513 91563761 Ssu7g0695 7 14026205 14033446 PCT