Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2990 ATGCAAGAATGTGTCATGgccccaacaacaacaacaacaacaacatcgtACCGCGGAGTTCGGCAGCGAAAATGGGGCAAATGGGTGTCCGAAATCCGCGAGCCtgggaagaaaagaagaatatgGTTGGGGAGCCACGAGGCACCAGAGATGGCGGCAGCAGCATATGACAGTTCCAAACCTGAGGATGTACAAGTGGCAGCACAACAAGCGGCATTGATGTTCAGAAGGTCACCAACGATGTCATCATCTGATCAAGGATGTGGCAATgacattcataataataataataataataatgtcaaGGGTAGTGGTGTGGTTCCTGTGAGGGTGGGACTCTCACCCACACAAATTCAGGCCATCAATGAGTCCCCCATTGGACTCGCCCAAGATGTGGATGATGCAAATGGCAGAGGCGCTCAGGGTCTAAATTCCCGAATTGATTGTCACACTGAGGCAACAGAAATAAAGTTGGCATTTTAA 483 0.4224 MQECVMAPTTTTTTTSYRGVRQRKWGKWVSEIREPGKKRRIWLGSHEAPEMAAAAYDSSKPEDVQVAAQQAALMFRRSPTMSSSDQGCGNDIHNNNNNNNVKGSGVVPVRVGLSPTQIQAINESPIGLAQDVDDANGRGAQGLNSRIDCHTEATEIKLAF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2990 160 ProSiteProfiles AP2/ERF domain profile. 16 76 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 SUPERFAMILY DNA-binding domain 16 59 IPR016177 GO:0003677
Ssu2g2990 160 SMART rav1_2 16 82 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 Gene3D AP2/ERF domain 16 62 IPR036955 GO:0003700|GO:0006355
Ssu2g2990 160 CDD AP2 17 80 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 57 - -
Ssu2g2990 160 Pfam AP2 domain 16 58 IPR001471 GO:0003700|GO:0006355
Ssu2g2990 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 58 133 - -
Ssu2g2990 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 12 57 - -
Ssu2g2990 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 58 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2990 Ssu-Chr2 91497792 91499139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2990 15 127 AP2-EREBP Transcription Factor Family AT1G71450 45.802 4.05e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu2g2990 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2990 - - gmx:100788567 172.555