Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2980 ATGAGTTGGAGTTCAGGTTCAGCGCTGCATCGAACAAACACAAACCGGGACAAGAAGTTCAAGGGAGTTCGGCGTCGGAAATGGGGCAAGTGGGTGTCGGAGATTCGTGCTCCGGGCACGCAAGAGCGTCTGTGGCTGGGAACCTACGCCACGCCGGAGGCTGCGGCGGTGGCTCACGACGTTGCTGTCTACTGTCTGAGGAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAGACCTTGTCTTCCTACAGCGTTCACCTCAGGGACATGTCTCCGAGGTCTGTTCAGAAGGTGGCTTCCGATGTTGGCATGGACGTGGATGCCAGAAACATTTTTGCGGGCAAAACTTCAACGGTGGTGGGGCCAGAAACTTACGAGAGTGAGAAGAAAACTGACGATGATGATCACGTGCATAACGGGAGTGTGTGTAATGTTGGACCCGGTGCTGATCATTCTGATGTCTTTTGGTGGGATGGTTTGGGGGATCATGATGGTGGGACTTGGCAACGAAGTGGTGACGATTGTGGAGAAAGGGAGGCCTTGAGCATCTCCATTGAAGATTATCTTTAG 573 0.5323 MSWSSGSALHRTNTNRDKKFKGVRRRKWGKWVSEIRAPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSYSVHLRDMSPRSVQKVASDVGMDVDARNIFAGKTSTVVGPETYESEKKTDDDDHVHNGSVCNVGPGADHSDVFWWDGLGDHDGGTWQRSGDDCGEREALSISIEDYL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2980 190 CDD AP2 18 80 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 SMART rav1_2 19 84 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 129 - -
Ssu2g2980 190 ProSiteProfiles AP2/ERF domain profile. 19 78 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g2980 190 Gene3D AP2/ERF domain 18 80 IPR036955 GO:0003700|GO:0006355
Ssu2g2980 190 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Ssu2g2980 190 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Ssu2g2980 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 10 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2980 Ssu-Chr2 91364899 91365471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2980 12 138 AP2-EREBP Transcription Factor Family AT1G71520 52.713 2.22e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2980 AP2 3.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2980 - - gmx:100816257 260.766