Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2963 ATGGAATCTATGTTGCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCACCTCTACAGTTCTTTTCCATGATGTCACTTTCACCTAGCATAGGATCTCCCTATCCTTGGCATAGAGAACTGAAATCTGAGGAAAGGGGTTTGCGTTTGATCCATTTGTTGCTCACTTGTGCAAATCATGTGGCTGCTGGTAGTGTTGAAAATGCAAATATCATACTTGAGCAGATTTCCCAGCTTGCATCTCCTGATGGGGATACTATGCAGCGAATCGCTGCATATTTCACCGAAGCACTTGCTGATCGGATACTGAAAACATGGCCTGGTCTCCATAGGGCCCTCAATTCCACCAGAATAGTTATGGTTTCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTTCCCTTCATGAAGGTGGCATATATTCTGACAAATCAGGCTATTGTCGAAGCCATGGAAGGGGAGAAAATGGTGCATATAATTGATCTCAATGCCGCCGAACCAGCACAGTGGATTGCTCTCCTCCAAGTTCTGAGTGCACGTCCCGAAGGCCCTCCCCATTTGAGAATTACTGGGGTTCATCAGCAGAAAGAGGTTCTGGATCAGATGGCTCATAAACTGACTGAAGAAGCAGAAAAGTTGGATATCCCATTCCAATTCAACCCTGTGGTCAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTAGCAGTAAGTTCTATTCTGCAGTTACACTCCCTTTTGGCCTTGGATGATGAGGCCTTGCGGAGAAAATCTCCTCTTCtgtcaaaaaattcaaatgcaatttACCTGCAGAAAGTCCTGCTGATGAACCAAAACACACTGGGCGATTTGCTTGAAAAGGATATGGTTAATGGCTATAGCCCAAGTCCTGATTCAGCCTCATCGTCGCCAGCGTCTTCAACTGCTTCAATGAATTCGGAGGGCTTTCTTAATGCCTTGTGGGGGTTGTCACCAAAGGTCATGGTTGTAACTGAACAAGACTCAAATCACAACGGTTCGACCCTGATGGAGAGGCTGCTAGAAGCTCTATATTCTTATGCTGCATTGTTTGATTGTTTGGAATCCACTGTGTCAAGAGCATCCATGGAGAGATTAAGGATTGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATCATTGCTTGTGAGGGAGCtgaaagaaaggaaagacaTGAAAAGATGGATAAGTGGATCCAGAGACTTGATTTACCTGGCTTTGCCAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGGAGGTTCCTTCAGAGCTATGGTTGTGAGGGATATAGGATGAGGGAGGAAAATGGTTGTGTAATGATTTGCTGGCAGGATCGGTCCTTGTTTTCTGTAACAGCTTGGAGATCAAGGAAGTAA 1425 0.4316 MESMLQEEGSSSVTSSPLQFFSMMSLSPSIGSPYPWHRELKSEERGLRLIHLLLTCANHVAAGSVENANIILEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFFELFPFMKVAYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGVHQQKEVLDQMAHKLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAVSSILQLHSLLALDDEALRRKSPLLSKNSNAIYLQKVLLMNQNTLGDLLEKDMVNGYSPSPDSASSSPASSTASMNSEGFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRASMERLRIEKMLFGEEIKNIIACEGAERKERHEKMDKWIQRLDLPGFANVPLSYYGMLQARRFLQSYGCEGYRMREENGCVMICWQDRSLFSVTAWRSRK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2963 474 Pfam GRAS domain family 49 471 IPR005202 -
Ssu2g2963 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Ssu2g2963 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 473 IPR005202 -
Ssu2g2963 474 PANTHER SCARECROW-LIKE PROTEIN 3 5 473 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2963 Ssu-Chr2 91124162 91125586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2963 1 474 GRAS Transcription Factor Family AT1G50420 68.182 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu2g2963 GRAS 6.2e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2963 - - tcc:18589932 782.326