Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2952 ATGGCAACGTTGGCGCACTTGTGTCTACCGTTGCTCATGTTTCTTCTCCCTCTCAGAGGGGAAGTACTTTGCGACCACATTTCATGCGGCGAAATCGATATTCAGTTCCCTTTCGGTTTGAGAGGAGCGAATCAAAGGTGTAGGTACCCCAGATTCCAACTTTCCTGCGACAACCGAAGCCGAACCATCCTTAGCCTCCCAGGTTCGGGGGATTTGGTCGTTAAAAGCATCAATTACAAGGCCCAAACCGTTAAGGTAAACGACCCTGAAGGTTGCCTCCCTAAACGATTTTTGCACAACTTGAGCCTTTCCCTGCACCCACCATTTATGTTTGTTGCAACCGTTTACGACCTAACCTTCCTTCGTTGCCCTTCCAACATAACCGACTCGCACCCACTCCCGCCAATTTCTTGCCTCGCAGACTCCAACTCCTCTTCGGTCATATTCTCGTGGTGGCCTCGCGGTGACACGTCACCATGGCGTGATCAGTGTGAGATGATAGCCTCGGCTTTTGTTCCCATTCCAAATCCAGACACAACGACGTCGTTTTTCTTGCCGGATCTGAATAATGATGTTGAGCTGAAGTGGAACGAACCCGCGTGTGGGGATTGTGCTGGTCGTGGCGAGGTTTGCGGTTCACCGGGGACACGAGTCAACAAGTTGGATGCTTCACTGCTCCTAGTCCTAACGAAAGCCAAGCAGGGCAGGCCCAGCACCGCGCTTCCGAGCTCGATTACTATCGTACCACCACCGTCGTTCAAAATGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCCAAGACTCTCCTTGGTGACAGTGGGCGCTTACCCAATTCGAATGATAACACGTGCCCAATATGCCTGTCTGAATACGAGCCCAAGGAGACACTGAGGACCATACCTGAGTGTAACCATTATTTTCATGCACAATGCATAGACCAGTGGCTCAAGATGAACGCTACATGCCCCTTATGCAGGAATTCACCGGATCCATCCTCTGCTGTtaccccttcttcttcttctttatctATCTATTCGTCTTTGCCATAG 1050 0.4962 MATLAHLCLPLLMFLLPLRGEVLCDHISCGEIDIQFPFGLRGANQRCRYPRFQLSCDNRSRTILSLPGSGDLVVKSINYKAQTVKVNDPEGCLPKRFLHNLSLSLHPPFMFVATVYDLTFLRCPSNITDSHPLPPISCLADSNSSSVIFSWWPRGDTSPWRDQCEMIASAFVPIPNPDTTTSFFLPDLNNDVELKWNEPACGDCAGRGEVCGSPGTRVNKLDASLLLVLTKAKQGRPSTALPSSITIVPPPSFKMGLNGPEIEKFPKTLLGDSGRLPNSNDNTCPICLSEYEPKETLRTIPECNHYFHAQCIDQWLKMNATCPLCRNSPDPSSAVTPSSSSLSIYSSLP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2952 349 SUPERFAMILY RING/U-box 278 332 - -
Ssu2g2952 349 SMART ring_2 284 325 IPR001841 -
Ssu2g2952 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 331 IPR013083 -
Ssu2g2952 349 Pfam Ring finger domain 282 326 IPR001841 -
Ssu2g2952 349 ProSiteProfiles Zinc finger RING-type profile. 284 326 IPR001841 -
Ssu2g2952 349 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 214 - -
Ssu2g2952 349 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 230 347 - -
Ssu2g2952 349 CDD RING-H2_PA-TM-RING 283 326 - -
Ssu2g2952 349 MobiDBLite consensus disorder prediction 329 349 - -
Ssu2g2952 349 Pfam Wall-associated receptor kinase galacturonan-binding 24 88 IPR025287 GO:0030247
Ssu2g2952 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 214 - -
Ssu2g2952 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 230 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2952 Ssu-Chr2 90974567 90979860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2952 24 332 C3H Transcription Factor Family AT2G46495 35.045 1.66e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2952 - - gmx:100810240 317.005