Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2940 ATGCATCCCACGGCGAGTAGCACCGACACCAAATCAAAAGAAATCGAACGACGCTACGACAGCTACCGAAAGAAGAGAAAGCGTCCCTGCGAGGTCGCTCCTATGGAGAAATCCGGCGTCACCGGAGAAGAGAAGTGCACCAAGGATGCTGCTGCCGCCGCCTCCTCCGCGTCGCACGGTTTCATATCCGTGATCGGGCGGCGGCGCGTGATGGAGGACGCCGTGAAGGTGGTTCCCGGCCTAGTGGCGGCGGAGCAGCGCTCTGGCGGCTACGACTTCTTCGCGGTGTACGACGGGCACGGCGGGACGTTGGTGGCGAACGCGTGCCGCGACAGGCTGCACCTGTTGGTGGCGGAGGAAGTGATGGGGGAGAGCGCGGAGAAGGGGTTGGATTGGTGCGAGGTGATGCTTTCGTGCTTCATGAAGATGGACCGGGAAATTGGAgtcggcggcggcggcggcgacgGGAACACGATGGGGTCGACggcggcggtggtggtggtCGGGAAGGAGGAGATTGTGGTGGCCAATTGTGGAGACTCGAGGACGGTGTTGTGCCGTGGCGGTGTAGCTGTGCCACTTTCACGTGATCACAAGCCTGATCGTCCGGATGAAAAAGAGAGGATAGAAGCGGCAGGTGGGAGAGTCATCAATTGGAACGGAAATCGTGTTTTGGGAGTACTTGCTACTTCCAGATCCATAGGGGATCACTGCATGAAGCCTTTTGTGATTTCTCAACCAGAGACCAACGTGTACGCAAGGACAGAGTCGGATGAGTTTGTTGTAGTGGCGAGTGATGGGCTATGGGATGTAGTGTCTAACAAGTTTGTTTGTGAGGTGGTAAGAAGTTGCCTCCGTGGGCAAATGAGGAGGAACTTAAAAGAGGAGGACTCGATTATAAGCTATGCCACAGAGGCGGCAGCGTTGTTAGCCGAGTTGGCTATGGCTCGTGGAAGCAAAGACAACATCAGTGTCATAGTCATCCAGCTGAAGACTACTACAACTTGA 1008 0.5337 MHPTASSTDTKSKEIERRYDSYRKKRKRPCEVAPMEKSGVTGEEKCTKDAAAAASSASHGFISVIGRRRVMEDAVKVVPGLVAAEQRSGGYDFFAVYDGHGGTLVANACRDRLHLLVAEEVMGESAEKGLDWCEVMLSCFMKMDREIGVGGGGGDGNTMGSTAAVVVVGKEEIVVANCGDSRTVLCRGGVAVPLSRDHKPDRPDEKERIEAAGGRVINWNGNRVLGVLATSRSIGDHCMKPFVISQPETNVYARTESDEFVVVASDGLWDVVSNKFVCEVVRSCLRGQMRRNLKEEDSIISYATEAAALLAELAMARGSKDNISVIVIQLKTTTT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2940 335 SMART PP2C_4 48 328 IPR001932 -
Ssu2g2940 335 SUPERFAMILY PP2C-like 57 331 IPR036457 -
Ssu2g2940 335 MobiDBLite consensus disorder prediction 1 41 - -
Ssu2g2940 335 PANTHER ALPHABET, ISOFORM E-RELATED 25 332 - -
Ssu2g2940 335 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Ssu2g2940 335 MobiDBLite consensus disorder prediction 7 33 - -
Ssu2g2940 335 ProSiteProfiles PPM-type phosphatase domain profile. 58 330 IPR001932 -
Ssu2g2940 335 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 25 332 - -
Ssu2g2940 335 Pfam Protein phosphatase 2C 59 323 IPR001932 -
Ssu2g2940 335 CDD PP2Cc 59 330 IPR001932 -
Ssu2g2940 335 Gene3D - 52 334 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2940 Ssu-Chr2 90836129 90837899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2940 49 331 PP2C-type Phosphatase Gene Family AT2G29380 48.986 4.50e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2940 K14497 - gmx:100813248 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2940 2 90836129 90837899 Ssu2g2940 2 90836129 90837899 ECH