Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2939 ATGGAGGGAATGCGAGAAAGGAAGTCACAGTTTGAACTCCAAGACGGTGCTGATATTGGGTCCTCTTTATCAAAGCTCATATTAACAAGTGGCGCAAACACCCTGGACTCAATTTTCTCCAATTGCCCCCAAACAAACAGCACTACCAGCAACTGTGTGTTGGAACCCTTTGGGTCTTCGGGGTTTAAGCCTTTGGGCTCCTCCGTGTACCTCCGCCAAAGAGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGAAAGGGAATGGCAAACCCGCCTCTAAACTCTGTTTGCACGAGTTCGTTGACTTCTTCTTTGGCGAACCCTTGCAAGAAAAAACTCTACAGGGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCGGAAATTAGACTGCCCCAGAACAGGATGCGAGTGTGGTTGGGCACTTACGACACCGCCGAAGCTGCCGCGTATGCCTACGATCGCGCCGCGTATAAGCTACGTGGGGAGTACGCGCGTTTGAATTTCCCCAATCTGAAGGACCCCAGCCAGTTAGGCTTCGGAGATTCCGCCAGATTGAACGCTTTGAAGAGCTCCGTGGATGCCAAAATTCAAGCCATATGTCAAAAGGTGAAAAGGGAGAGAGCCAAAAAGAGTGCCGCCAAGAAGCTTCTCAGTTCGGGCAGCGGCGACCCTAACCGCGGGCAGAGCGAGAAGTCGCACAAGGTCAACTCCTCCTCGGCGCCGCTGTCGCCGTCGATTTTTTACGACAACTGGGCGAACGAGTTGTTTTCGCCGACCGTTTCGGAGGATGGGATTTGGAAGGGGGAGAACTCGCCGGCCTCGGTTTCCACGGAATGTCCGACGACGGTAACGGAGGGAACGGAGTTCGAAGGTTGTTCTCTGGCAAGGTTGCCTTCCTTCGATCCCGAGTTGATTTGGGAAGTTCTGGCCGTTTAG 942 0.534 MEGMRERKSQFELQDGADIGSSLSKLILTSGANTLDSIFSNCPQTNSTTSNCVLEPFGSSGFKPLGSSVYLRQRDILQKFYQESRGKGMANPPLNSVCTSSLTSSLANPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSQLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKSAAKKLLSSGSGDPNRGQSEKSHKVNSSSAPLSPSIFYDNWANELFSPTVSEDGIWKGENSPASVSTECPTTVTEGTEFEGCSLARLPSFDPELIWEVLAV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2939 313 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Ssu2g2939 313 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Ssu2g2939 313 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Ssu2g2939 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 312 - -
Ssu2g2939 313 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Ssu2g2939 313 CDD AP2 113 173 IPR001471 GO:0003700|GO:0006355
Ssu2g2939 313 Gene3D AP2/ERF domain 114 172 IPR036955 GO:0003700|GO:0006355
Ssu2g2939 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 312 - -
Ssu2g2939 313 MobiDBLite consensus disorder prediction 212 243 - -
Ssu2g2939 313 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Ssu2g2939 313 MobiDBLite consensus disorder prediction 223 243 - -
Ssu2g2939 313 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2939 Ssu-Chr2 90813873 90814843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2939 17 312 AP2-EREBP Transcription Factor Family AT1G64380 49.398 1.96e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2939 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2939 - - gmx:100785364 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2939 2 90813873 90814843 Ssu2g2939 2 90813873 90814843 ECH