Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2937 ATGTTTCCGCactttgaaaacaaattatctTCAATTCCTCTGAACAGTCTATGCCCCCCTCCGCGTTTCTATCACGAGGTGAGCGTCCCCaaaaaaaggcaaagaaagATGTCCACGACCGCAACTACAACCTCCGAAGAAGTGAGCAGTAATGAGTGGGAATTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAGGCTGGTCGGGGACAGGTGGAATTTGATAGCGGGTCGCATTCCAGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGTGATGCTTTTTCTGTTACAAGAAATGGAAGTAAAGCCAAAGACTCGTGA 351 0.4359 MFPHFENKLSSIPLNSLCPPPRFYHEVSVPKKRQRKMSTTATTTSEEVSSNEWEFIHMSEQEEDLIRRMYRLVGDRWNLIAGRIPGRKAEEIERFWIMRHGDAFSVTRNGSKAKDS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2937 116 SUPERFAMILY Homeodomain-like 59 97 IPR009057 -
Ssu2g2937 116 CDD SANT 58 96 IPR001005 -
Ssu2g2937 116 Pfam Myb-like DNA-binding domain 59 97 IPR001005 -
Ssu2g2937 116 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 32 108 - -
Ssu2g2937 116 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 32 108 - -
Ssu2g2937 116 SMART sant 54 102 IPR001005 -
Ssu2g2937 116 Gene3D - 59 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2937 Ssu-Chr2 90761976 90766931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2937 58 96 MYB Transcription Factor Family AT5G52600 58.974 6.03e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu2g2937 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2937 K09422 - gmx:100814431 144.436