Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2936 ATGGAAAGCGACAAGAGTTGTGAGCAGAACGCACTAATCAATGAGCTAATTCAGGGGATGGAGGTAGCAAGAAAGTTGAAGGAAGATTTGAGTTTACCCTCCTCGGTTGACACGAGGGACTCATTGTTGCAGAGGATATTATCTTCTTATGACAGGGCTTTACTTATTCTAAGATGGAATGCACCAATTTCCATGTCACAAATCATGCATCAAGGAACTAAAACTTCTTCACCACAGTCCCCAGTATCCGTCGAAAGAAGTCCACTGAGGGAGGACACTGAAGGTGGCCGCAAGGATCATCAGGAactaaaacacaattcaaagaAAAGAAAAATGATGCCCAAATGGACGGAACAGGTTAGAGTGAAGATCGAGAATGGCGTTGAAGGACACCTCGTAGATGGTTACAGCTGGAGAAAATATGGACAGAAAGACATCCTTAGTTCAAAATATCCCAGAAGCTATTATAGGTGCACCTTCCGCAAAACCAAGGGCTGCTGCGCCACGAAGCAAGTGCAGAGATCAGAAGAAGACCCCACTATCATTGGCATAACTTACAGAGGAAGCCACACCTGCTGGAAGGGAAACGACGCCGTTCTGCCCCCAAAGTCACCAGACATAGAAGAGAAGCCGCATGGTTGTGATAGTAACGTTCAGTTTCACCATGCACAGCCATCACAAGAAAGCCTTACAAAGTGCACAAACGCTTTGAGTGTCAAAACGGATAACATAACGGCACATCCATTCGCTTCCCTTTCGACTTCATTTGGATGCACGACACAAGATAACCGCACCTTCCTTCCTTCTTTGGTCCTAGAGAATGACCCTCTCTTGAGCAGCCTTTCCCACACATCCTTGTTATCTCCAAGCACACCGGAATCAAATTATTTTGCGTCTCCGTCTTTCCACGTACATGGATTCGATGGGGTCTGTAACAAGCCGCGCCCAGAGTCTGAAGTTGCCGGGATCGTTTCAGCTGATACATCAACCACCAATTTTCCAATTTTCGACTTTAATTTCTCACTCGATGCATTGGGAATTGATGATTCAAATTTCCCCTTCAATGTCTCCGGATTTTTATCCTAA 1086 0.4484 MESDKSCEQNALINELIQGMEVARKLKEDLSLPSSVDTRDSLLQRILSSYDRALLILRWNAPISMSQIMHQGTKTSSPQSPVSVERSPLREDTEGGRKDHQELKHNSKKRKMMPKWTEQVRVKIENGVEGHLVDGYSWRKYGQKDILSSKYPRSYYRCTFRKTKGCCATKQVQRSEEDPTIIGITYRGSHTCWKGNDAVLPPKSPDIEEKPHGCDSNVQFHHAQPSQESLTKCTNALSVKTDNITAHPFASLSTSFGCTTQDNRTFLPSLVLENDPLLSSLSHTSLLSPSTPESNYFASPSFHVHGFDGVCNKPRPESEVAGIVSADTSTTNFPIFDFNFSLDALGIDDSNFPFNVSGFLS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2936 361 MobiDBLite consensus disorder prediction 70 86 - -
Ssu2g2936 361 Gene3D WRKY domain 117 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2936 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 356 IPR044810 GO:0003700
Ssu2g2936 361 Pfam WRKY DNA -binding domain 134 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2936 361 MobiDBLite consensus disorder prediction 70 115 - -
Ssu2g2936 361 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 356 - -
Ssu2g2936 361 SUPERFAMILY WRKY DNA-binding domain 132 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2936 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2936 361 MobiDBLite consensus disorder prediction 87 102 - -
Ssu2g2936 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2936 Ssu-Chr2 90739366 90740947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2936 8 353 WRKY Transcription Factor Family AT4G11070 35.735 6.98e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g2936 WRKY 6.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2936 - - gmx:100127370 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2936 2 90739366 90740947 Ssu2g2936 2 90739366 90740947 ECH
Ssu4g2921 4 74551597 74553684 Ssu2g2936 2 90739366 90740947 ECH
Ssu4g0144 4 2422086 2424132 Ssu2g2936 2 90739366 90740947 ECH
Ssu2g2936 2 90739366 90740947 Ssu4g2921 4 74551597 74553684 ECH
Ssu2g2936 2 90739366 90740947 Ssu4g0144 4 2422086 2424132 ECH
Ssu2g2936 2 90739366 90740947 Ssu5g3141 5 79600238 79601555 PCT