Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2926 ATGTCTCAACCCGAGTCCGacacgaagaagaagaagcagcgCGGCGGCAGTGCGAAGAATGAAGAGGAGGAGGGGTTGATGATCAAGCCGCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCGATCCTCCTCAAGAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCTCTCAAGCGCCCCCTCGTCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCCTCCTCCCACGAGGTTGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAAACCGGCCACAGCGGCACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACACGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAGTACGTCTGCATCGCCCGCCTCCACTCCGCCGTCCGGGACGTCTCCAGAGTGGCCCGCGGCCTCGAGACCCTCACCGGCGCCGTCTTCCAGCGCCCGCCCTTGATCTCCGCCGTCAAACGCCAGCTCCGGATTCGGACCATTTACGAGAGTAAGCTCCTCGAGTATGACCCTGATAGGCACTTGGTTGTATTCTGGATCTCGTGTGAGGCTGGGACATATGTTAGGACCATGTGTGTTCACTTAGGGTTGCTTCTTGGTGTGGGGGGCCACATGCAGGAGCTTAGGAGGGTTCGCTCTGGGATTATGGGTGAGAAGGATAACATGGTTTCCATGCATGATGTTATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGAGTTACTTGAGGAGGGCTGTTATGCCCTTGGAGGTTCTTTTGACCAATTATAAGAGGCTCGTTGTTAAGGATTCTGCTGTCAATGCTATTTGTTATGGTGCCAAGTTGATGATTCCCGGCTTGCTTAGGTTTGAGAATGATGTTGAGGTTGGGGAGGAGGTTGTGCTCATGACTACTAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGCGTCGTGGCCAAGATTAAGAGGGTGGTCATGGATAGGGATACTTATCCCAGGAAATGGGGTTTGGGACCAAGGGCTTCCATGAAGAAGAAGCTCGTTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCCAATGAGAAGACTCCTCAGGAGTGGCTTAGGAATCTGGTTTTGCCAACTGGTGGAGATAGTGTCATTGCAGGCATGGCTGCTGCTCCTGAACCCGAGGATGACAAGGTTAAGAAGGATGGAGATGGGGAAGGGCGGAAGAGAAAGAAGCATGAAAGCACTGTGGATAGCCCCGATTCGCTTCCTGCTAAGAAGGTGAAAGTGAATGAAGTGGAAGAGGTTGAGAAGCTAGAAATGGCGAAGGTGAAGAAGGTGGGCAAAGAGGCTGTGGAGGTTGAAgttgagaagaaagagaagaaagagaagaagaagaagaaaagaaggacAAAGAGAGCAGCGAAGTGGCGTCTTCGGACGAGGAGAAaactgaaaagaagaagaagaagcacaaGGATAAGGTTGAAGACGGTTCACCAGATTTAG 1602 0.5162 MSQPESDTKKKKQRGGSAKNEEEEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLVEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVRDVSRVARGLETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRAVMPLEVLLTNYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLVAEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPEDDKVKKDGDGEGRKRKKHESTVDSPDSLPAKKVKVNEVEEVEKLEMAKVKKVGKEAVEVEVEKKEKKEKKKKKRRTKRAAKWRLRTRRKLKRRRRSTRIRLKTVHQI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2926 533 MobiDBLite consensus disorder prediction 424 456 - -
Ssu2g2926 533 Gene3D Pseudouridine synthase 72 278 - -
Ssu2g2926 533 SMART pua_5 287 361 IPR002478 GO:0003723
Ssu2g2926 533 TIGRFAM unchar_dom_2: uncharacterized domain 2 280 358 IPR004521 GO:0003723
Ssu2g2926 533 Pfam DKCLD (NUC011) domain 39 96 IPR012960 -
Ssu2g2926 533 Pfam TruB family pseudouridylate synthase (N terminal domain) 100 216 IPR002501 GO:0006396
Ssu2g2926 533 MobiDBLite consensus disorder prediction 486 507 - -
Ssu2g2926 533 Pfam PUA domain 287 359 IPR002478 GO:0003723
Ssu2g2926 533 ProSiteProfiles PUA domain profile. 286 361 - -
Ssu2g2926 533 MobiDBLite consensus disorder prediction 416 456 - -
Ssu2g2926 533 MobiDBLite consensus disorder prediction 514 533 - -
Ssu2g2926 533 Gene3D PUA domain 39 370 IPR036974 GO:0003723
Ssu2g2926 533 SUPERFAMILY PUA domain-like 286 367 IPR015947 -
Ssu2g2926 533 MobiDBLite consensus disorder prediction 493 507 - -
Ssu2g2926 533 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 20 505 IPR004802 GO:0006396
Ssu2g2926 533 CDD PseudoU_synth_hDyskerin 78 260 - -
Ssu2g2926 533 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 20 505 - -
Ssu2g2926 533 SUPERFAMILY Pseudouridine synthase 39 284 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu2g2926 533 TIGRFAM CBF5: putative rRNA pseudouridine synthase 46 371 IPR004802 GO:0006396
Ssu2g2926 533 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g2926 533 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g2926 533 Pfam tRNA pseudouridylate synthase B C-terminal domain 217 283 IPR032819 -
Ssu2g2926 533 Coils Coil 475 505 - -
Ssu2g2926 533 SMART DKCLD_2 38 96 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2926 Ssu-Chr2 90627183 90628784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2926 6 460 NAC Transcription Factor Family AT3G57150 82.135 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2926 K11131 - gmx:100780706 813.142