Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2923 ATGACTGCGCCACCGACGAAGTACACTCACCACACCAAACTACTCACACCCCCCGAACCCAAGCACCCATATCCCAGACTCGTCAGAATAACCGTCACAGACACCGACGCCACCGACTCCTCCAGCGACGAAGAAGAATCCTTCAACTCTTCCACGCGCCACCGACAACGACACAGAAAGTTCGTCAACGAAATTTCCATCGAGTCGTGCGCCGGCGAGAACCACGTCGTCGTTTCGCGGAAGAGAAACAGAAGCACTGTGGGCAAAACCAGAGCCCCAGACACTCGGCGCGTGTCCTCGGGAAAGAAATTCCGAGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCCGCGGAGATTCGAGACCCCTCGCGACGCGTTCGGTTGTGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCATGAGTCAAGACCCGCCGCCGGCGCCAAACGGTTACGTTTCCGGGGAAGAAACTCAAAGTCAAAACAAAAACCTGTTTTCTCCCACTTCTGTGCTTCACTGTTGTTCGTTGTCCGAGGAAGCTGAGTCCGTAACGGGCAAAGACGATGAGCGCTCCTGCGTGTCGGAGAATTTCAAGGCCAAATCTGAATCACCGTTTTCGATTCCGAGCGATGTACAATTTGACTTCCGAGGTTGTTCGCCGGCGCCGGATGTGTTCGACGACTTCGATAGGGCGCCGGAGAGTGCGTTGTTCTGCGACGATTGGCCTGGTTTGTTTCTCACTTCTTGTGAGGATTTCGGTTTCAAAAGTTGGCATACGGATACAAATCGTGACTTTTTCCAAGACATCGACGATTTATTTGTCTCGGATCCCCTTCTTGCTCTCTGA 849 0.543 MTAPPTKYTHHTKLLTPPEPKHPYPRLVRITVTDTDATDSSSDEEESFNSSTRHRQRHRKFVNEISIESCAGENHVVVSRKRNRSTVGKTRAPDTRRVSSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMSQDPPPAPNGYVSGEETQSQNKNLFSPTSVLHCCSLSEEAESVTGKDDERSCVSENFKAKSESPFSIPSDVQFDFRGCSPAPDVFDDFDRAPESALFCDDWPGLFLTSCEDFGFKSWHTDTNRDFFQDIDDLFVSDPLLAL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2923 282 ProSiteProfiles AP2/ERF domain profile. 103 144 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 Pfam AP2 domain 103 141 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 MobiDBLite consensus disorder prediction 1 57 - -
Ssu2g2923 282 Gene3D AP2/ERF domain 102 145 IPR036955 GO:0003700|GO:0006355
Ssu2g2923 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 147 279 - -
Ssu2g2923 282 MobiDBLite consensus disorder prediction 79 105 - -
Ssu2g2923 282 SMART rav1_2 103 151 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 MobiDBLite consensus disorder prediction 138 159 - -
Ssu2g2923 282 MobiDBLite consensus disorder prediction 87 101 - -
Ssu2g2923 282 CDD AP2 102 144 IPR001471 GO:0003700|GO:0006355
Ssu2g2923 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 142 - -
Ssu2g2923 282 SUPERFAMILY DNA-binding domain 103 144 IPR016177 GO:0003677
Ssu2g2923 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 147 279 - -
Ssu2g2923 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2923 Ssu-Chr2 90581757 90582682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2923 1 282 AP2-EREBP Transcription Factor Family AT4G23750 38.109 1.42e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2923 AP2 5.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2923 - - gmx:100779905 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2923 2 90581757 90582682 Ssu5g3128 5 79468752 79469669 PCT