Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2920 ATGGAACGCATTTTGTGCTTCATCTATTTGGTGGCTCTGATGCTCATGCTCATGCTCTGTCAAGCAAATGCAGAACCTACTGAAGACAAAGAAGCATTGCTTGACTTGGTGGAAAAGTTGCCTCCCTCAAGGCCTCTGAATTGGAACGCAACCTCTTCCCCATGTACCTCTTGGACCGGTGTAACCTGCGACCCAGGCAAGTCACGAGTTATAGCCATTCGCTTGCCAGGGTTTGGGTTTCACGGAACCATTCCTCCCAACACAATAAGCCGCGTCACGGGCCTCCAAACACTCAGTCTCAGATCCAACTTCATAACCGGCCATTTCCCTTCCGACTTCTCCAATCTCAGGAACCTTTCCTTTCTCTACCTTCAGTTCAACAATTTCACGGGCCCCTTGCCGGACTTCTCCGCCTGGAGGAACCTCTCCGTTGTGAACTTGTCCAACAATTGTTTCACCGGCTGCATTCCTCTCTCGCTCTCGAATCTGACGAATCTCTCTGCCATGAATCTCGCCAACAACTCGCTCTCTGGGGAAATCCCTGTCTCTCTGCGGAGGTTTCCCAAGTCAGCATTCGTTGGAAACAATGTTTCTCTCGAACCCTCTCCTCCCGTGGCTCCATTTTCTAAACCTGCGAAAGTGAAGCACGGCGAAGCTTTGGTGTTGGGAGTTGTTGCCGCTGTCGCTCTTGTTGGTCTCGCGGCATTCgttgtttttatctttgtatGCTGCTCGAGGAAGAGGAATGGGTTTGGTCGGAAGTTGCAGAAGGGAGATATGTCTCCGGGGAAAGTGGCGTCACGAGACCTGGATGCGAATAATAAGCTTGTTTTCTTCGAGGGGTGTAGTTATGCGTTTGACTTGGAGGATTTGCTGAGGGCTTCTGCTGAGGTACTGGGGAAGGGGACATTCGGTGCTGCCTACAAGGCTGCGCTGGAGGATGCTACCACTGTTGTTGTCAAGAGGTTGAAGGAGGTGGCTGTTGGAAGGAAGGACTTTGAGCAGCACATGGAGGTTGTTGGGAATCTTAAACATGAGAATGTGGTTGAGCTAAAGGGGTATTACTATTCCAAAGACGAGAAACTCATGGTGTATGATTACTACACGCAGGGGAGTCTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATGCTCGGATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTGCTCGTATCCATTGCGAGAATGGTGGGAAACTTGTACATGGCAATATCAGATCCTCAAATATCTTTCTGAATGCTGAACGGTATGGTTGTGTGTCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTTGCCATACCCATCTCGCGAGCTGCTGGTTACAGAGCGCCTGAAGTTACGGACACCAGGAAAGCGACACAACCTTCTGACGTTTTCAGCTTTGGTGTGGTGTTGCTAGAGCTTCTGACTGGGAAATCCCCTGTCTACACGACTGGTGGCGATGAGATTGTGCACTTGGTGAGATGGGTTCACTCGGTTGTGAGAGAGGAGTGGACGGCCGAAGTATTTGACCTGGAGCTGATCAGATATCCCAATATAGAGGAAGAGATGGTGGAAATGTTGCAGATAGCCATGTCATGCGTGGTAAGGGTTCCTGATCAGAGGCCTAAAATGTCGGAAGTTGTAAAAATGATAGAAACTGTCAGGCAGATTGATATAGTGAATCAGCCATCATCAGAGAACCAAGCGGAAACTGCAACGCAGACCCCATCAACCCCTTGA 1770 0.4938 MERILCFIYLVALMLMLMLCQANAEPTEDKEALLDLVEKLPPSRPLNWNATSSPCTSWTGVTCDPGKSRVIAIRLPGFGFHGTIPPNTISRVTGLQTLSLRSNFITGHFPSDFSNLRNLSFLYLQFNNFTGPLPDFSAWRNLSVVNLSNNCFTGCIPLSLSNLTNLSAMNLANNSLSGEIPVSLRRFPKSAFVGNNVSLEPSPPVAPFSKPAKVKHGEALVLGVVAAVALVGLAAFVVFIFVCCSRKRNGFGRKLQKGDMSPGKVASRDLDANNKLVFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGRKDFEQHMEVVGNLKHENVVELKGYYYSKDEKLMVYDYYTQGSLSALLHGKRGEDRVPLDWDARMKIALGAARGLARIHCENGGKLVHGNIRSSNIFLNAERYGCVSDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPSDVFSFGVVLLELLTGKSPVYTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMSEVVKMIETVRQIDIVNQPSSENQAETATQTPSTP 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2920 589 SUPERFAMILY L domain-like 39 190 - -
Ssu2g2920 589 Gene3D Phosphorylase Kinase; domain 1 262 367 - -
Ssu2g2920 589 PANTHER PROTEIN, PUTATIVE-RELATED 19 577 - -
Ssu2g2920 589 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Ssu2g2920 589 Pfam Protein tyrosine and serine/threonine kinase 297 560 IPR001245 GO:0004672|GO:0006468
Ssu2g2920 589 PANTHER OS05G0588300 PROTEIN 19 577 - -
Ssu2g2920 589 Pfam Leucine rich repeat 84 129 IPR001611 GO:0005515
Ssu2g2920 589 Gene3D Ribonuclease Inhibitor 26 203 IPR032675 -
Ssu2g2920 589 Gene3D Transferase(Phosphotransferase) domain 1 369 585 - -
Ssu2g2920 589 ProSiteProfiles Protein kinase domain profile. 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2920 589 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Ssu2g2920 589 SUPERFAMILY Protein kinase-like (PK-like) 297 562 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2920 Ssu-Chr2 90532465 90535121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2920 1 589 Receptor kinase-like Gene Family AT4G23740 59.213 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu2g2920 PK_Tyr_Ser-Thr 2.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2920 - - gmx:100783234 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2920 2 90532465 90535121 Ssu2g2920 2 90532465 90535121 ECH
Ssu2g2920 2 90532465 90535121 Ssu5g3127 5 79423528 79426423 PCT