Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2904 ATGGGGAACTGTAACAGCGGAGCCTCTTCCtcccaaacccaaacccaaacccaGCCACATTCGCATTCGGACCCTCCCTCCGACGGCATCACCGTCCTCCCTCCCAATTCCAAGCCCTCCGTGGGCCGGGTCCTGGGCCGGCCCATGGAGGATGTCCGCTCCACCTACACCTTCGGCCGCGAACTGGGCCGCGGCCAATTCGGCGTCACCTACCTGGTGACCCACAGACACACGAAACAACAGTTTGCGTGCAAATCCATCGCGACGCGCAAACTCGTTCACCGAGATGACTTGGAGGACGTTCGGCGCGAGGTGCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGAGCCTACGAGGACCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGGATCATTGCCAAGGGCCACTACTCGGAGCGCGCCGCCGCCGACTTGTGCCGCCAGATCGTGACGGTGGTGCACGACTGTCACACCATGGGAGTGATGCATAGGGATCTGAAGCCGGAGAACTTCTTGTTCCTCAGCAAGGACGAGAACCCGCCGCTTAAGGCCACGGATTTCGGTCTCTCCGTGTTTTTCAAGCCggGCGATGTATTTAAGGATCTCGTTGGGAGTGCGTACTACGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTACATTCTGCTCTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGACGCTATTCTTCGTGGACGTATTGATTTCGCATCAGATCCTTGGCCTTCCATATCCAGTAGCGCCAAAGATCTGATCAAGAAGATGTTACGAGCTGACGCCAAAGAAAGGCTCTCAGCAGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTAGATATTGCTGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGgTTATTGCTGAAAACCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTGCCAAAACTAGGTACTAAGATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGtaagatttcttttattttgtttgattatgcCCTAG 1245 0.506 MGNCNSGASSSQTQTQTQPHSHSDPPSDGITVLPPNSKPSVGRVLGRPMEDVRSTYTFGRELGRGQFGVTYLVTHRHTKQQFACKSIATRKLVHRDDLEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAADLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENPPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGRIDFASDPWPSISSSAKDLIKKMLRADAKERLSAVEVLNHPWMREDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAVRFLLFCLIMP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2904 414 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2904 414 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Ssu2g2904 414 MobiDBLite consensus disorder prediction 1 25 - -
Ssu2g2904 414 Pfam Protein kinase domain 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2904 414 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Ssu2g2904 414 SUPERFAMILY Protein kinase-like (PK-like) 53 325 IPR011009 -
Ssu2g2904 414 SMART efh_1 360 388 IPR002048 GO:0005509
Ssu2g2904 414 SUPERFAMILY EF-hand 339 404 IPR011992 -
Ssu2g2904 414 CDD STKc_CAMK 56 313 - -
Ssu2g2904 414 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Ssu2g2904 414 Pfam EF hand 361 387 IPR002048 GO:0005509
Ssu2g2904 414 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2904 414 MobiDBLite consensus disorder prediction 1 48 - -
Ssu2g2904 414 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 404 - -
Ssu2g2904 414 Gene3D Transferase(Phosphotransferase) domain 1 142 321 - -
Ssu2g2904 414 CDD EFh 361 404 IPR002048 GO:0005509
Ssu2g2904 414 Gene3D Phosphorylase Kinase; domain 1 58 141 - -
Ssu2g2904 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Ssu2g2904 414 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 13 404 - -
Ssu2g2904 414 Gene3D - 322 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2904 Ssu-Chr2 90378302 90382091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2904 42 403 EF-hand Containing Proteins AT4G23650 83.747 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu2g2904 Pkinase 3.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2904 K13412 - gmx:100817321 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2904 2 90378302 90382091 Ssu5g3115 5 79231564 79237582 PCT