Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2893 ATGGATTGGGATTTGCAAGCTATTGTGGGACGCACCAAAGCCCCAGCCACCATCATGGACAACGCGCATCCCATTTTTTCTCAACATTTCTGCTCTGAACAAGATGACGTCCTAATTTGCAATTTCCAGGAATTCTCAGAAACCACAACGGTGGTTGATGAATTAGAAGAACTTTACAAACCTTTCTACCCCATCGTTTCAAATTCCCCACCTATCCCGGATAAAACCGAAGAAGTCAAAGTACAAGATTTGCACGATTCCGCAGCATCTAAATGCAGAAAAAGCCAGAAGAAGCAGAAGAACAAGAGGGTGAAGCATGTGACAGCAGCAGATGGTGTTTCGGACCAATGGGCATGGCGTAAATATGGGCAGAAACCAATCAAGGGATCACCATATCCCCGTAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTCGGCTAGGAAACACGTGGAACGGAGCCATTTGGACCCTGGAGTTTTCGTAGTTACCTACACATCAGAACACAGCGATCCTCACCCAACTcgcaaaaactcacaaccacgcAACAACAGTTCCACAATTGCACCTCCAACAACTCATGATGATCAACAGACACGTACACTCTCTCCAAACGTTGAACTTAAACAAAGTAAGGAGCTTAAGAAAGAGGAAGGTTTTGTAGAAAGTGATGGTAATTGGTTTCCAAGCATCGAGGTTGAGGAACTAAAAGGACTTGCATTAGATAACATGTGCCTTCGTGGATAG 747 0.4324 MDWDLQAIVGRTKAPATIMDNAHPIFSQHFCSEQDDVLICNFQEFSETTTVVDELEELYKPFYPIVSNSPPIPDKTEEVKVQDLHDSAASKCRKSQKKQKNKRVKHVTAADGVSDQWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKHVERSHLDPGVFVVTYTSEHSDPHPTRKNSQPRNNSSTIAPPTTHDDQQTRTLSPNVELKQSKELKKEEGFVESDGNWFPSIEVEELKGLALDNMCLRG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2893 248 SUPERFAMILY WRKY DNA-binding domain 108 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2893 248 ProSiteProfiles WRKY domain profile. 108 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2893 248 MobiDBLite consensus disorder prediction 166 220 - -
Ssu2g2893 248 Pfam WRKY DNA -binding domain 115 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2893 248 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 216 IPR044810 GO:0003700
Ssu2g2893 248 SMART WRKY_cls 113 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu2g2893 248 Gene3D WRKY domain 96 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu2g2893 248 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 2 216 - -
Ssu2g2893 248 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2893 Ssu-Chr2 90182869 90183724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2893 2 179 WRKY Transcription Factor Family AT4G23550 43.000 1.49e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu2g2893 WRKY 3.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2893 K13426 - gmx:102667019 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2893 2 90182869 90183724 Ssu5g3099 5 78822314 78823530 PCT