Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2888 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCCGAGGAGGATGAGAAACTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCGGATATTAGGAGAGGCAGGTTTACACCGGAAGAGGAGAAGTTAATTATAAGCCTACATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACCTGCCAGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTggatcaaaaagaaaattaaaaagcctTCGATGCCTTCATCAATCACCACTACACAAAGCGTTGATGATCACCCCCagttcaattataattttaatcaactaGATCACTTTGCCAACCAAGAAAATGTAACAACAGCAAGGCCACCGGTACAAGAAACCTTATTTTCCTCCACGTGCCCCCTATTTATGTTTGACATTAGTTCATTAGATCAAGGGACAACAACAATAGACACCAATGTACGCGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCTCTGAAACGTGGAACTTGAGCCACCATCAAGTCCACGCCCTTCCTCCTCAACCAGCAGCAGGAGCAGCTGCAGTTATGGATACTACGAATTATCTGCCACCATTGATAGAGAACGTGGATAACATGGTGCCAAATATTGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACAATGTCCCAGCTTTCTTTTCTGGGACAATGTTGAAGGACAACTTGGAGGGGAAGAACTAGCACCAAACACGTCAAATATGGGAACCAATTCACTTTCgccttttccttcctttttttga 957 0.4222 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIKKPSMPSSITTTQSVDDHPQFNYNFNQLDHFANQENVTTARPPVQETLFSSTCPLFMFDISSLDQGTTTIDTNVRAELFQDSLGLSSETWNLSHHQVHALPPQPAAGAAAVMDTTNYLPPLIENVDNMVPNIEVQSCSIDEEGEMALECLRRQELNEWVENQQQCPSFLFWDNVEGQLGGEELAPNTSNMGTNSLSPFPSFF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2888 318 CDD SANT 69 112 IPR001005 -
Ssu2g2888 318 PANTHER MYB DOMAIN PROTEIN 55 1 316 - -
Ssu2g2888 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu2g2888 318 MobiDBLite consensus disorder prediction 297 318 - -
Ssu2g2888 318 CDD SANT 17 61 IPR001005 -
Ssu2g2888 318 PANTHER MYB TRANSCRIPTION FACTOR 1 316 - -
Ssu2g2888 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu2g2888 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu2g2888 318 Gene3D - 68 138 - -
Ssu2g2888 318 Gene3D - 6 66 - -
Ssu2g2888 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu2g2888 318 MobiDBLite consensus disorder prediction 298 318 - -
Ssu2g2888 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu2g2888 318 SMART sant 66 114 IPR001005 -
Ssu2g2888 318 SMART sant 13 63 IPR001005 -
Ssu2g2888 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu2g2888 318 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2888 Ssu-Chr2 90107649 90109539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2888 1 302 MYB Transcription Factor Family AT1G63910 51.389 1.81e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g2888 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2888 K09422 - gmx:100797787 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2888 2 90107649 90109539 Ssu2g2888 2 90107649 90109539 ECH
Ssu2g2888 2 90107649 90109539 Ssu5g3093 5 78664633 78666984 PCT