Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2887 ATGAACCAGCAAGAGAGTGCGGTGGTGAGCCATATTGAGCTGGAAGGTGGAGACGAAAAATTGGTGACCAAGCGGCAAAGGGATAGTGTGGTAGCAGAGCTTCTTACCGTAGCCGTCTGCACCGTAGCAAACATGATCATTCCTGAGAAGAACCGTAGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGATCGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAGTCTAGGGAATACGTGCGCGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACCTACCTCAATCTTCCCTCCGAAATTGTGCCGGCCACTCTCAAGAAGCAGGCCAAGCCCGCTGGAAGACCATTCGGTGGCCCATCCGGTGATCGTCCTAGGGGCCCACCTCGCTTTGATGGAGAGAGGAGATTCGGTGGTGATCGTGATGGATACCGTGGAGGTCCCCGGGGACCTGGTGGTGACTTTGGAGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTCCTGGCGGAAGGCCTGGCTTCGGTCGTGGTGCTGGTGGTTATGGAGCACCAACTAGTTCAAACATTccttaa 672 0.5327 MNQQESAVVSHIELEGGDEKLVTKRQRDSVVAELLTVAVCTVANMIIPEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGAPTSSNIP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2887 223 MobiDBLite consensus disorder prediction 137 223 - -
Ssu2g2887 223 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 28 222 - -
Ssu2g2887 223 Pfam Plectin/S10 domain 47 138 IPR005326 -
Ssu2g2887 223 MobiDBLite consensus disorder prediction 156 172 - -
Ssu2g2887 223 Gene3D - 45 148 IPR036388 -
Ssu2g2887 223 PANTHER 40S RIBOSOMAL PROTEIN S10 28 222 IPR037447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2887 Ssu-Chr2 90101684 90104409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2887 45 223 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 74.302 1.12e-76 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2887 K02947 K09422 gmx:100797787 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2887 2 90101684 90104409 Ssu5g3092 5 78644240 78645963 PCT