Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2882 ATGAACGCCGCGCCTTTCTTCCTCCCTATGCATACGCAGCACACCGAATCATTCCCCACCGACACTTTTCCTCCTTTCTCCGCTTCCACCGGCGCCGCATCCCCACACTCTGTCACCTCCAACAGCCACATCAACGACACCCTCAATGGCGTCCCCGGCACCACAGATTTGGGCCTGTTTGGGTTCGGATCTTGGCCCGCATTGGTTTCCTATTGCTGCTGCTGTgTTTTGGTCCCTTTGACAGAGCCACAACGATTTGATGCCTATAGCCTTGAAAAATCATGCCAGCAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACACTGTAGGGCCAGGACAACTAGTTGAAAGAACTTCACAGGTGGATGCTGCAATGGAGAGGCTGGAACCTCTGCTGAGCTTTGTGAACTAG 414 0.5242 MNAAPFFLPMHTQHTESFPTDTFPPFSASTGAASPHSVTSNSHINDTLNGVPGTTDLGLFGFGSWPALVSYCCCCVLVPLTEPQRFDAYSLEKSCQQGMEKLQQMLADTVGPGQLVERTSQVDAAMERLEPLLSFVN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2882 137 Coils Coil 132 137 - -
Ssu2g2882 137 PANTHER TRANSCRIPTION FACTOR TGA9 74 137 - -
Ssu2g2882 137 MobiDBLite consensus disorder prediction 19 40 - -
Ssu2g2882 137 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 74 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2882 Ssu-Chr2 90048181 90048698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2882 76 137 Calmodulin-binding Proteins AT5G65210 50.667 1.14e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2882 K14431 - gmx:100780003 90.1225