Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2881 ATGTTACAAGATGGGTACGTGGGTTCTAAAGCTGCAAATATTTATCAACAAGGACATTTCCTGCTGAAAAACTCCAAGTACTTGGTGCCTGCACAGGATCTTCTCAACGAGTTTTGTAGCCTAGGCACAAAGCAAGGCGACGTGGGAAAGCCAAAACCGTCCTCGAAGAAGTGGGAAGAGGATAATAATAACGGTATCGGTTCTTCGAAGAAGCATTGTCTCACCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAagagTTGGACAGGAGATACAAGAACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCAGTGGCGGGGAATGGTGCCGCCACGGTGTACTCGGCGCTGGCGTTGAAAGCCATGTCGAGACATTTCAGGTGTTTGAAGGATGGGATTTTGGGGCAGATTGAGGCCACAAGGAAAGCCATGGGAGAGAAAGACTCAGTTGCACCGGGCACAACAAGGGGCGAAACACCAAGGCTTAAGATCATTGACCAAACGCTGAGGCAACAAAGGGCGTTCCAGCAAATGAGCATCATGGAAACTCATCCTTGGAGACCCCAACGTGGCCTTCCCGAGCGTGCCGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTTTAGCCCGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATCAATGCAAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGAGCATGAAGACAACATAGCTTCGTCAGAGGGGGCTACCGATCAAGACAATGACATTAACCCAAATGTTCAAAACCCACCACCTCCTTCATCACGATCAGAGGATCAGAAGCCATCACTGGTTCGAATTGACTCCGAGTGTGCGTCCTCCTCCGTCATCAACAACCACACCCCAGATAACAAAAACGACCCAAAGGGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTGGATTTTTCATCTTACACGCGCCACTCCTCGGGCATGGTTTCTTACGGAAGTAATGATCAGAATGGGAACAACCAGAGCGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGGGTGAGCCTAGCGTTCCCGCCAGCAGCACAGAGTTCACTGTATTACccaagggaccaaattgaagaTTGTCAAACAGTTCAGTATTCTCTTTTGGATGGTGAAGGACAAAACCTGCCTTACAGAAATTTGATGGGAGCACAGCTGCTCCATGACTTGGCAGGATAG 1314 0.4871 MLQDGYVGSKAANIYQQGHFLLKNSKYLVPAQDLLNEFCSLGTKQGDVGKPKPSSKKWEEDNNNGIGSSKKHCLTSLEFVELQKRKTKLLSMLEELDRRYKNYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILGQIEATRKAMGEKDSVAPGTTRGETPRLKIIDQTLRQQRAFQQMSIMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKEHEDNIASSEGATDQDNDINPNVQNPPPPSSRSEDQKPSLVRIDSECASSSVINNHTPDNKNDPKGQEQCFGSVELDFSSYTRHSSGMVSYGSNDQNGNNQSGVSLTLGLQQHGVSLAFPPAAQSSLYYPRDQIEDCQTVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2881 437 MobiDBLite consensus disorder prediction 50 65 - -
Ssu2g2881 437 Gene3D - 201 263 - -
Ssu2g2881 437 Coils Coil 79 113 - -
Ssu2g2881 437 SMART prehox3 16 147 IPR006563 -
Ssu2g2881 437 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 396 - -
Ssu2g2881 437 CDD homeodomain 198 259 IPR001356 GO:0003677
Ssu2g2881 437 MobiDBLite consensus disorder prediction 45 65 - -
Ssu2g2881 437 Pfam Homeobox KN domain 215 254 IPR008422 GO:0003677|GO:0006355
Ssu2g2881 437 Pfam Associated with HOX 22 145 IPR006563 -
Ssu2g2881 437 ProSiteProfiles 'Homeobox' domain profile. 195 258 IPR001356 GO:0003677
Ssu2g2881 437 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 13 396 - -
Ssu2g2881 437 SMART HOX_1 198 262 IPR001356 GO:0003677
Ssu2g2881 437 MobiDBLite consensus disorder prediction 312 338 - -
Ssu2g2881 437 MobiDBLite consensus disorder prediction 271 338 - -
Ssu2g2881 437 SUPERFAMILY Homeodomain-like 199 264 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2881 Ssu-Chr2 90029960 90032418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2881 20 436 Homeobox Transcription Factor Family AT5G41410 51.339 2.53e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu2g2881 POX 7.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2881 - - gmx:100803088 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2881 2 90029960 90032418 Ssu2g2881 2 90029960 90032418 ECH