Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2876 ATGTCTTCTGATCTCTATACTTTTGACATTTCTTTCCACACACATTCAAGCCCAGACAACATGGTCTCTTATGAAGGAGATGGAGACCTTCTGTTCTTCTCTGACCCTTGCCCTTTCCCTTTCTTCACTGCCTCTCCGATTGATGTGCTTCAAGGGAATTTTAACAATTCTCTTGacccttctttcttctctttctctcctcaGGAAAACGAGAGCTTCTTCCATGCTAACCCTGTGGGTGTGCAGCCTCTGTCTAGTGCCCCAAATACAAAGGGTGAGTTTACAAATTTCTCTGCTTTGCATGGGTCCGAAGTGACAAGTGAGGAATGCCAAATGGGTGTGGATTATACCTACAATCAGCACTTTCTTTCTCAAACTTGTCATGGTTCTGAAAGTGCATCAAAGTTACTGCATAGGAGCTTCAGCTGTAACTCTTTCGATGGGAAGCCTGGTTTCCCCTTTGAACCTCACCCTGACACTCTCATGGACTCCCCAAATTTTCAATGGCGTGCTTTGAACTCCCCTGAAAACATTTTCTTCACTGGAGAAATGAGGAGGGTGTGCAGTGCAGGAGATTTGCAGAGCATGAAAGCAACAGATATGTCTCAAACGGAGAGCCCCTTGTTGGAGGAACAAAACTTCAAAGTAGGGCGTTATAGTGccgaagaaagaaaacaaaaaatctcTAAATACATAGCCAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCACGCAATGATGAAATCAGCGAGATTCCTAAAGCTCCTTGTTCAAGTTCAACCACAGAAGAATATGAAGACGAATTCTGggttgaattcattgaaggattaaaTGACGAGGTCATCGGTTAG 912 0.409 MSSDLYTFDISFHTHSSPDNMVSYEGDGDLLFFSDPCPFPFFTASPIDVLQGNFNNSLDPSFFSFSPQENESFFHANPVGVQPLSSAPNTKGEFTNFSALHGSEVTSEECQMGVDYTYNQHFLSQTCHGSESASKLLHRSFSCNSFDGKPGFPFEPHPDTLMDSPNFQWRALNSPENIFFTGEMRRVCSAGDLQSMKATDMSQTESPLLEEQNFKVGRYSAEERKQKISKYIAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEISEIPKAPCSSSTTEEYEDEFWVEFIEGLNDEVIG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2876 303 Pfam CCT motif 224 266 IPR010402 GO:0005515
Ssu2g2876 303 PANTHER CCT MOTIF FAMILY PROTEIN 51 300 - -
Ssu2g2876 303 ProSiteProfiles CCT domain profile. 224 266 IPR010402 GO:0005515
Ssu2g2876 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 300 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2876 Ssu-Chr2 89978359 89980580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2876 220 271 C2C2-CO-like Transcription Factor Family AT5G24930 44.231 2.02e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g2876 CCT 4.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2876 - - gmx:100786853 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2876 2 89978359 89980580 Ssu2g2876 2 89978359 89980580 ECH
Ssu2g2876 2 89978359 89980580 Ssu5g3080 5 78439719 78440147 PCT