Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2875 ATGAATGAGTCCCATTCTCTTTATAGAATCCAAGAGCATGTCTCGTTATCATCTCATCATGGTGCTACTGCTCTTGCTTTTCCTAGGGGACTCTTAGTTGATACTAATCTAGACACTTCAAGTCCTTATACTCATAGACTGCCTCTTACTCCTGTCCCTTTCAATGTTACTTTAGGTGTCACTCAAACTCCACTTGTTGCTCAAGAAATTTGTGGTGAAAAGACTAATACATCCTTGCAAACTACAAATTCTAATTCAATTCAAGAAACAATTGCTAGAGACAATCACGGGACCTCGACTAAGTCAGAAAAGCTGAAGGAATCAAAATGCAAAGTCCAAACTGCTTTAGAACTTGACTCAGCAATGGATTCTGAAATTGAACTTCCAAAGTCTACAAAACCTAACATTTTAGTGGAAAATGAGGATGCATGCCCAATTTGTTTAAAAGGTCATATTGTCACAACTTCTTTATTCAACTTATTTGGGTTTCAACATTAA 498 0.3675 MNESHSLYRIQEHVSLSSHHGATALAFPRGLLVDTNLDTSSPYTHRLPLTPVPFNVTLGVTQTPLVAQEICGEKTNTSLQTTNSNSIQETIARDNHGTSTKSEKLKESKCKVQTALELDSAMDSEIELPKSTKPNILVENEDACPICLKGHIVTTSLFNLFGFQH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2875 165 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 11 149 - -
Ssu2g2875 165 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 11 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2875 Ssu-Chr2 89952059 89952556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2875 11 151 C3H Transcription Factor Family AT5G41350 37.762 2.19e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2875 - - gmx:100816369 174.096