LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2871	ATGCCATTATGGTGGGGAAAATCTTCATCCAAAGAggtaaagaggaaagaaaacagGGGAAGTATTATTGATACAATACAgaggaaattaaataaatcaagagGGTCTAGGAGACATCGTAGTGACACTATCTTAGAGAAGGGATCTAGATCCCTTGTGCCTTCAAGATCACCATCACCCTCAACACATGCCTCCCGCTGTCAAAGTTTTGCAGAAAGGCCTCTTGCTCAGCCACTCCCCCTCCCACTCCCAGGGACGCACCTTCCTGCCGCCAATCGTGCAAATTCTGGAACTAGTGTAACTTCAAAACTAGAAAGCACCAGAGGCTCAAAGTCATCTCTATATTTCCCCCTACCAAAACCTGGTTGTGTTTCTAACAGGGAAGAACCTACGGATGCTGAGGAAGATATAGCCACTGCATCAGTTTCTAGTGGCAGCTCTATTGATAGTGATGACCTATGTGACTCACATTTCCTTAGTCCTCTGGCATCTGACTGTGAAAATGGAAACCGAGCAATCGTTCACAGTGCTGTCAGTGTGGTGCGCAAGGATCAGTCACCCATTACCATCCAAAAAAACTCGAGAGTATCCTCAAAACCAGCTCCTCAATTGTGCAATCATCAACTTTTATCTAGCACACCCAAAGGGGCTTCTTTGCATCTGCCAAATCTGCAAACAGCTTGGTCAGGTGGTTTATGGAGTGCTCCCAACAGTTCAAAGTCAAGTCCTTCTAGAAGTCCACTGAGAGCATTTGGTTCTGAGCAAGTTTTGAACTCTGGATTCTGTACAGGAAAGCCATGTCCAGATATAGCTTCTGGGCACTGCTCTAGTCCAGGTTCAGGCCATAATTCTGTTGGTGGGGATCTGACAGGGCAGATATTCTGGCTGCAGACCAGGTGTAGCCCTGAGTGCTCTCCAATACCCAGTCCTGGAATGACTAGTCCTGGTTTCAGTTCTAGGATACACAGTGGTGCTGTCACCCCTCTTCATCCACGTGCTGGAGGTGCTGCAATAGAATCACCCACAAGATGTCCTCATGATGTAAAACAACAGACTCACCGATTACTACTTCCTCCGATATCAATCCCTAATTCCTGTCCGTTTTCTCCAACCTATTCTGCAACTACTACTCCTTCAGCACCTCGTAGTCCTGGCATAGCAGAAAATCTAACAAGCCCCAGTTCACGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGTGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAATTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAGAAATTACTTTGCTAAGTTGCCTGCGGCATCCCAATATAGTTCAATATTATGGATCTGAGACGGTAGAtgaaaaactttatatatactTGGAGTATGTCTCTGGTGGGTCAATCTATAAGTTGCTTCAACAATATGGCCAGCTTGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATTGTAAAAACACTGTCCATAGAGACATTAAAGGAGCAAACATATTGGTGGATCCTAATGGGAGGGTAAAATTGGCAGATTTTGGCATGGCAAAGCGTATAAGTGGGCAGTCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgttataaaaaattcaaatggtTGTAATCTTGCTGTTGATATATGGAGCCTAGGCTGCACCATTTTCGAGATGGCTACAACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCGGCTTTGTTTAAGATTGGAAACAGCAAGGAACTTCCTCCAATGCCAGATCATCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGCTTGCAAAGGAATCCACAGCATCGTCCATCCGCTGCTCAACTTCTGCTGCAtccatttgttaaaaaaatcacaCTGGAAAGACCTATTTTGTTTGCTGATCCTTCAGAAGCAAATCCTGCTTTTGTAAATGCTATGAGATCTCTGGCCGTTGGACCTGCAAAACATAATTTAGGTGTAGTTTCAGAAGCAGCTGGTACATATCTGTCTAAAAGCTCGAGAACTGGTTCAAGCTCaagTGATGCCCATACACCAAGGAACATCTCACGTCCTGTGTCTCCTACTGGGAGCCCACTTTTGCCATCTAGCTCACTGCATGTAAGTGGAAGGCTGTCTCCATCTCCCATATCTAGTCCTCCTACCACATCTGGCTCATCTACACCGCTCACCGGTGGCATTGGTGCAGTCCCTTTTCATCAAACAAAGCAGCCAACATTCTCATATGAAGGTGTCAGTGTGATCCAAAGGCCTCAAAATGCTCGTTATTCAAGTGGAAGCACTGCTTATCAGGAGCCAAAGCATGACCCAATTTGGGGGATCCTGCAAAGCACTTTTGCTTGCCCGGATATAGTTACGTCTTGCAATGATGCTCTTGGAAACCATAATAGGAGGGTTGTCCAGGGACTCCCCAAGAGAATTTTATGA	2541	0.4364	MPLWWGKSSSKEVKRKENRGSIIDTIQRKLNKSRGSRRHRSDTILEKGSRSLVPSRSPSPSTHASRCQSFAERPLAQPLPLPLPGTHLPAANRANSGTSVTSKLESTRGSKSSLYFPLPKPGCVSNREEPTDAEEDIATASVSSGSSIDSDDLCDSHFLSPLASDCENGNRAIVHSAVSVVRKDQSPITIQKNSRVSSKPAPQLCNHQLLSSTPKGASLHLPNLQTAWSGGLWSAPNSSKSSPSRSPLRAFGSEQVLNSGFCTGKPCPDIASGHCSSPGSGHNSVGGDLTGQIFWLQTRCSPECSPIPSPGMTSPGFSSRIHSGAVTPLHPRAGGAAIESPTRCPHDVKQQTHRLLLPPISIPNSCPFSPTYSATTTPSAPRSPGIAENLTSPSSRWKKGQLLGRGTFGHVYLGFNSESGEMCAMKEVILFSDDAKSRESAQQLGQEITLLSCLRHPNIVQYYGSETVDEKLYIYLEYVSGGSIYKLLQQYGQLGEIAIRNYTRQILLGLAYLHCKNTVHRDIKGANILVDPNGRVKLADFGMAKRISGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTIFEMATTKPPWSQYEGVAALFKIGNSKELPPMPDHLSEDGKDFVRLCLQRNPQHRPSAAQLLLHPFVKKITLERPILFADPSEANPAFVNAMRSLAVGPAKHNLGVVSEAAGTYLSKSSRTGSSSSDAHTPRNISRPVSPTGSPLLPSSSLHVSGRLSPSPISSPPTTSGSSTPLTGGIGAVPFHQTKQPTFSYEGVSVIQRPQNARYSSGSTAYQEPKHDPIWGILQSTFACPDIVTSCNDALGNHNRRVVQGLPKRIL	846

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g2871	846	CDD	STKc_MEKK1_plant	396	653	-	-
Ssu2g2871	846	ProSiteProfiles	Protein kinase domain profile.	397	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g2871	846	Gene3D	Transferase(Phosphotransferase) domain 1	394	672	-	-
Ssu2g2871	846	MobiDBLite	consensus disorder prediction	372	391	-	-
Ssu2g2871	846	MobiDBLite	consensus disorder prediction	48	68	-	-
Ssu2g2871	846	Pfam	Protein kinase domain	398	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g2871	846	ProSitePatterns	Protein kinases ATP-binding region signature.	403	426	IPR017441	GO:0005524
Ssu2g2871	846	MobiDBLite	consensus disorder prediction	1	146	-	-
Ssu2g2871	846	SUPERFAMILY	Protein kinase-like (PK-like)	395	731	IPR011009	-
Ssu2g2871	846	MobiDBLite	consensus disorder prediction	702	770	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2871	Ssu-Chr2	89881865	89886675	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2871	1	780	MAP Kinase Kinase Kinase	AT1G63700	61.625	0.0	853

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Ssu2g2871		Pkinase	5e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2871	K20717		-	gmx:100777350	1348.57

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2871	2	89881865	89886675	Ssu2g2871	2	89881865	89886675	ECH
	Ssu7g0807	7	16183802	16185065	Ssu2g2871	2	89881865	89886675	ECH

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