Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2871 ATGCCATTATGGTGGGGAAAATCTTCATCCAAAGAggtaaagaggaaagaaaacagGGGAAGTATTATTGATACAATACAgaggaaattaaataaatcaagagGGTCTAGGAGACATCGTAGTGACACTATCTTAGAGAAGGGATCTAGATCCCTTGTGCCTTCAAGATCACCATCACCCTCAACACATGCCTCCCGCTGTCAAAGTTTTGCAGAAAGGCCTCTTGCTCAGCCACTCCCCCTCCCACTCCCAGGGACGCACCTTCCTGCCGCCAATCGTGCAAATTCTGGAACTAGTGTAACTTCAAAACTAGAAAGCACCAGAGGCTCAAAGTCATCTCTATATTTCCCCCTACCAAAACCTGGTTGTGTTTCTAACAGGGAAGAACCTACGGATGCTGAGGAAGATATAGCCACTGCATCAGTTTCTAGTGGCAGCTCTATTGATAGTGATGACCTATGTGACTCACATTTCCTTAGTCCTCTGGCATCTGACTGTGAAAATGGAAACCGAGCAATCGTTCACAGTGCTGTCAGTGTGGTGCGCAAGGATCAGTCACCCATTACCATCCAAAAAAACTCGAGAGTATCCTCAAAACCAGCTCCTCAATTGTGCAATCATCAACTTTTATCTAGCACACCCAAAGGGGCTTCTTTGCATCTGCCAAATCTGCAAACAGCTTGGTCAGGTGGTTTATGGAGTGCTCCCAACAGTTCAAAGTCAAGTCCTTCTAGAAGTCCACTGAGAGCATTTGGTTCTGAGCAAGTTTTGAACTCTGGATTCTGTACAGGAAAGCCATGTCCAGATATAGCTTCTGGGCACTGCTCTAGTCCAGGTTCAGGCCATAATTCTGTTGGTGGGGATCTGACAGGGCAGATATTCTGGCTGCAGACCAGGTGTAGCCCTGAGTGCTCTCCAATACCCAGTCCTGGAATGACTAGTCCTGGTTTCAGTTCTAGGATACACAGTGGTGCTGTCACCCCTCTTCATCCACGTGCTGGAGGTGCTGCAATAGAATCACCCACAAGATGTCCTCATGATGTAAAACAACAGACTCACCGATTACTACTTCCTCCGATATCAATCCCTAATTCCTGTCCGTTTTCTCCAACCTATTCTGCAACTACTACTCCTTCAGCACCTCGTAGTCCTGGCATAGCAGAAAATCTAACAAGCCCCAGTTCACGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGTGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAATTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAGAAATTACTTTGCTAAGTTGCCTGCGGCATCCCAATATAGTTCAATATTATGGATCTGAGACGGTAGAtgaaaaactttatatatactTGGAGTATGTCTCTGGTGGGTCAATCTATAAGTTGCTTCAACAATATGGCCAGCTTGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATTGTAAAAACACTGTCCATAGAGACATTAAAGGAGCAAACATATTGGTGGATCCTAATGGGAGGGTAAAATTGGCAGATTTTGGCATGGCAAAGCGTATAAGTGGGCAGTCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgttataaaaaattcaaatggtTGTAATCTTGCTGTTGATATATGGAGCCTAGGCTGCACCATTTTCGAGATGGCTACAACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCGGCTTTGTTTAAGATTGGAAACAGCAAGGAACTTCCTCCAATGCCAGATCATCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGCTTGCAAAGGAATCCACAGCATCGTCCATCCGCTGCTCAACTTCTGCTGCAtccatttgttaaaaaaatcacaCTGGAAAGACCTATTTTGTTTGCTGATCCTTCAGAAGCAAATCCTGCTTTTGTAAATGCTATGAGATCTCTGGCCGTTGGACCTGCAAAACATAATTTAGGTGTAGTTTCAGAAGCAGCTGGTACATATCTGTCTAAAAGCTCGAGAACTGGTTCAAGCTCaagTGATGCCCATACACCAAGGAACATCTCACGTCCTGTGTCTCCTACTGGGAGCCCACTTTTGCCATCTAGCTCACTGCATGTAAGTGGAAGGCTGTCTCCATCTCCCATATCTAGTCCTCCTACCACATCTGGCTCATCTACACCGCTCACCGGTGGCATTGGTGCAGTCCCTTTTCATCAAACAAAGCAGCCAACATTCTCATATGAAGGTGTCAGTGTGATCCAAAGGCCTCAAAATGCTCGTTATTCAAGTGGAAGCACTGCTTATCAGGAGCCAAAGCATGACCCAATTTGGGGGATCCTGCAAAGCACTTTTGCTTGCCCGGATATAGTTACGTCTTGCAATGATGCTCTTGGAAACCATAATAGGAGGGTTGTCCAGGGACTCCCCAAGAGAATTTTATGA 2541 0.4364 MPLWWGKSSSKEVKRKENRGSIIDTIQRKLNKSRGSRRHRSDTILEKGSRSLVPSRSPSPSTHASRCQSFAERPLAQPLPLPLPGTHLPAANRANSGTSVTSKLESTRGSKSSLYFPLPKPGCVSNREEPTDAEEDIATASVSSGSSIDSDDLCDSHFLSPLASDCENGNRAIVHSAVSVVRKDQSPITIQKNSRVSSKPAPQLCNHQLLSSTPKGASLHLPNLQTAWSGGLWSAPNSSKSSPSRSPLRAFGSEQVLNSGFCTGKPCPDIASGHCSSPGSGHNSVGGDLTGQIFWLQTRCSPECSPIPSPGMTSPGFSSRIHSGAVTPLHPRAGGAAIESPTRCPHDVKQQTHRLLLPPISIPNSCPFSPTYSATTTPSAPRSPGIAENLTSPSSRWKKGQLLGRGTFGHVYLGFNSESGEMCAMKEVILFSDDAKSRESAQQLGQEITLLSCLRHPNIVQYYGSETVDEKLYIYLEYVSGGSIYKLLQQYGQLGEIAIRNYTRQILLGLAYLHCKNTVHRDIKGANILVDPNGRVKLADFGMAKRISGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTIFEMATTKPPWSQYEGVAALFKIGNSKELPPMPDHLSEDGKDFVRLCLQRNPQHRPSAAQLLLHPFVKKITLERPILFADPSEANPAFVNAMRSLAVGPAKHNLGVVSEAAGTYLSKSSRTGSSSSDAHTPRNISRPVSPTGSPLLPSSSLHVSGRLSPSPISSPPTTSGSSTPLTGGIGAVPFHQTKQPTFSYEGVSVIQRPQNARYSSGSTAYQEPKHDPIWGILQSTFACPDIVTSCNDALGNHNRRVVQGLPKRIL 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2871 846 CDD STKc_MEKK1_plant 396 653 - -
Ssu2g2871 846 ProSiteProfiles Protein kinase domain profile. 397 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2871 846 Gene3D Transferase(Phosphotransferase) domain 1 394 672 - -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 372 391 - -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 48 68 - -
Ssu2g2871 846 Pfam Protein kinase domain 398 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2871 846 ProSitePatterns Protein kinases ATP-binding region signature. 403 426 IPR017441 GO:0005524
Ssu2g2871 846 MobiDBLite consensus disorder prediction 1 146 - -
Ssu2g2871 846 SUPERFAMILY Protein kinase-like (PK-like) 395 731 IPR011009 -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 702 770 - -
Ssu2g2871 846 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 793 - -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 91 113 - -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 9 23 - -
Ssu2g2871 846 SMART serkin_6 397 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2871 846 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 793 - -
Ssu2g2871 846 MobiDBLite consensus disorder prediction 702 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2871 Ssu-Chr2 89881865 89886675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2871 1 780 MAP Kinase Kinase Kinase AT1G63700 61.625 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu2g2871 Pkinase 5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2871 K20717 - gmx:100777350 1348.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2871 2 89881865 89886675 Ssu2g2871 2 89881865 89886675 ECH
Ssu7g0807 7 16183802 16185065 Ssu2g2871 2 89881865 89886675 ECH