Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2870 ATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCACAGAAATTCTCAGAGAGGCAGGCGTTGGGCACAGGAGCTCAAAGTGACAAGGACTACAAGGAGGCACCACCAGCACCGTTGTTTGAGCCAGGGGAACTTAAGTCATGGTCTTTTTACAGAGCTGGGATTGCAGAGTTTGTGGCCACGTTCTTGTTCCTCTACATCACTGTCTTAACTGTGATGGGCGTGAACAGGTCACCCAACAGGTGCTCCTCTGTTGGCATTCAAGGAATTGCATGGGCTTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACAGCTGGAATATCAGGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTTTGGCTAGGAAGCTGTCCCTCACAAGAGCGGTGTTCTACATTGTGATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGGTTTGAGGGTAATGCAAGGTATGAGTTGTACAAAGGTGGAGCGAATTTCGTGAGTCATGGATACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTTATTCTTGTTTACACCGTCTTCTCTGCCACCGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGATATTGGCCCCTCTTCCAATCGGATTTGCTGTGTTTTTGGTCCACTTGGCAACCATTCCTATCACAGGAACGGGCATTAACCCGGCTAGGAGCCTCGGTGCTGCTATAATATACAACAGAGACCGTGCTTGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTGTATATCACCAGACAGTGATCCGAGCAATTCCTTTCAAGACAAGGGGTTAA 861 0.4959 MEREEDVKVGAQKFSERQALGTGAQSDKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSPNRCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFEGNARYELYKGGANFVSHGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDRAWDDHWIFWVGPFIGAALAAVYHQTVIRAIPFKTRG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2870 286 Pfam Major intrinsic protein 43 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Ssu2g2870 286 PANTHER AQUAPORIN PIP1-6 3 285 - -
Ssu2g2870 286 CDD MIP 51 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g2870 286 SUPERFAMILY Aquaporin-like 43 278 IPR023271 -
Ssu2g2870 286 TIGRFAM MIP: MIP family channel proteins 55 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 285 IPR034294 -
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu2g2870 286 Gene3D Glycerol uptake facilitator protein. 36 284 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2870 Ssu-Chr2 89877090 89878620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2870 3 285 Major Intrinsic Protein MIP AT3G61430 86.219 3.34e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2870 K09872 - gmx:100796833 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2870 2 89877090 89878620 Ssu2g2870 2 89877090 89878620 ECH