Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2865 ATGGGGAAGGGTAAACCTAGGGCTGTGGAGAAAGGTGTGGTAGGACCTAGTCCGAGTGTTACGTCCTCGACTATACCTGCGGGGCCTGTGTATTACCCTACTGAGGATGAATTCAAGGATCCTTTGGAGTATATCTACAAGATTAGACCTGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCCAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTCGACTCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCACGCCCTGCCGCCTCTGACTCCAAGACCTTTGACTTGGAGTACTCTAGGTTTTTGCAGGACCACTCTAGTAAGAAGTCCAGGAAGAGGGTTGTGTTTGAGGGCGAGGAGCTAGACTTGTGTAAACTATTCAATGCCGTGAAGCGGTTTGGCGGGTATGATAAGGTTGTCGATGGGAAGAAATGGGGGGATGTTGCTCGGTTTGTGAGGTCCGGTGGGAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGGGAGCATTTGTATGATTACGAGAATTTCTACAACCGGATGAATCAAGGGTCAGCTCAGAGTTGTAAGAAAAGCGGGCATGAGGACCACAAGAGTGATCATGGGGTGCAATCTGGGGTATCGAAGAGGAATCACAAGAATGTAGATTGTTCGAAACGGAAGGATTGTAAAGTGCAAGAAGAAGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCACGGGGAAGTCATGCTTTTGTGTGACAGGTGTGATAAGGGCTGGCATACTTACTGTCTTTCCCCACCATTGAGGCAGATTCCTTCGGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCACTATTCATTGGAAGCTTTTAGACGCATAGCGGATCGGTCAAGGAGGAGATGGTTTGGATCAGGACCTGTTTCAAGGGtgcaaatagagaaaaaattttgGGATATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACGTCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCACAATCTATTGATGATAAATTATGGCAAGAATACTCAACTAACCCATGGAATCTTAACAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGCAGTCAAGCCAGTGTTTTTGAGAAGGTGATGAGAAGCAGCCTTCCTGATCTTTTTGAAGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTAAATCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCCGGGAATTTTGTTATTACCTTCCCTAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCTGACTGGCTACCATATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTCTGTGTAGTAGCCAAGTATGGTGATATTGATGGCAGAGTGTCGTCTTATTTGAAGAAGGAGTTGTTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTCTGGAAAAATGGTATTATTAAATCTTCTTGCATGGCTCCTCGAAAATGTCCCGAATATGTGGGAACTGAAgaaGATCCAGCATGCATTATCTGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGATTGCAGGTCATCAACTTTTGTTTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGAAAAACTACGTCTTCTCTATCGTCATTCACTTGCAGAGTTGTATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTATAGAAGTGTGAAAAGGCAGTCTTCATGTCTCAATGCTTTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAATGGCTTCTGCTATCTAGGACTATTCTTCAGAATGTTTTTTTGCATGATGCATTTGTTACTGCACTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAATGGGCAGAAGGGATAAGAGACTGCATAACAAAAATTGAGTCATGGTTGTGTGATCGGGACTCGAGTGTCAGGAAAGTTAATTTAGAATTTGTTGATGAGTTACTGAGATTTAGTCCTGCACCATGCAATGAGCCTCATTATCATAAATTGAAGGACTATGCAGAGGAAGCAAGGTTGTTAATTCGGGAGGTTGATACTGCTTTGTCAATGTGTTCAAATATGTCTGAGTTGGAACTTTTGTACTCCAAAGCTTGTGGCTTACCCATCTACGTGAAAGAAACTAAGAAATTAGAAGGGAAAATTTCTTCAACCAAGACATGGCTGGATAGTGTCAGAAAGTGCATATCAGCAAGACAGCCTGCTGCACTACACATTGATGTTCTTTACAAGTTAAAAGCAGAGTTTGTGGATCTTCAAGTTCAACTCCCCGAGATAGATGTGCTTCAGAATCTATTAAGTCAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGACGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAATTTCATAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCAGATGCTGTTTCATGGGTTTCCCACTTTAATGATGTTTTAGGGAGAGTTCACATGCAGAGAGATCAACATAATGCAGTTGATGAATTGAAGAGcatttttgaagaaggtttatctttgaaaattcaaGtTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAgGCACATGATTTGAAGATGCCTTTGGAATTCATTCAGCAACTGTTAAAGGAGGCCACTATGCTTCAAATTGAGGGAGAGAAACACTTTGTCAATTTATCTTGTGTGCTTGCTGTTGCCATGCCTTGGGAGGAAAGGGCTAGAGAGATGCTTTCACATGAGGCTCCTATTTTGACCTTTGAGGACATGATCAGGGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGATTTCAAGGATGCATTATTAGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAATCTCTTCTATGTGTGCTTCAAATTCTGTGCGAAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCTTTGGAAGAAAGAGGGATGCTTGAATTAGCTTTGAAGAACTGCAGAATATGGGAATGTGAAGCATGTTCTCTACTAGATGCTGCTCGGTGCTTATTTGAACTGGATAACTCTCTGCATGAAATAAACAGTGGTTTAATGTGCAAAGTGGAAGATTTGATTGCAAGAATCCAATCTGCCATAACATCTGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCATCTTGTTCTACACTGCAATGGTGCAAAAGAGCCCTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGGCCTTTCTGATTCCCCTGTTTCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGGAAAGCTTTAGAGGGTATTTCTGGACCTCAGAATTCTAGAAGATGCAAGTTGACTGACGTACAAGATATTCTTACCGATTATCAGACTATTAATATGACCTTTACAGCAGTAAATTGCCAACTTGAAGATGCCATTGGAAAACACAAGTTATGGCAAGAGCAAGTGCATAAATTTTTTGGTCTAAGTTCTAGAGAACGATCTTGGTCTTCAATGTTGCAGCTCAAGGAGCATGGAGATACCATTGCCTTTAGTTGCTCTGAACTGGAATTGATTTTATCTGAAGTTGAGAAAGTGGAAAATTGGAAGAAAAGATGCACGGATAAACTAGGAACTTTAGTCCAAAATGAAAATTCGCTATGTCATGCACTGGAGaagATAAAACAGACTCTGGATAGATCGTTGTTTATATACGACAAATTGCAAGATCTGAAGGAACAAAACCTATGTATCTGCTGCTTTGTTGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACCGCTATCATTTGCGGTGCGTTGGACTAACTGAAAAAGACACTGGCATTGAAAACTACAAGTGCCcttattgtgaaattttgagGGGTGAATTCCATTATCAGAATGGAGGTGCCCTCCTGAGGTTTGGGAAGAAGCGCGTTGAATTGAAAGTTCTTACTGAACTCATGTCTGATGCTGAACAGTTCTGTTTATGGATTGATGAAAGAGATGTTTTGAGCCAACTTGTTGAGAAGGCCCTTTCATGCAAATCTTGCTTGAGCAAAATTGTGATCCTTGCATCAGCTAATGTTGACGAAGATATTAGCGTTGTCTCTGAAAAATTGGTTACTGCTGTAAAgGCTAGCAAAGTGGCTGTTGTCTATGATCAGCATGATACTTGTGACCTTGAGCTGGCTTTAGCAAAAAACTTTTGGAAAATTCACGTCAATAGATTGTTAAATGGTGTCCCAAAGCCCACTATCCAACAAATTCAGAAGCATCTGAAGGAGGGACTGGCTATGGACATATTACCTGAAGATCGCCATATGTTGAAACTTACAAATGTGAATTGCTTGGGTTTGCAATGGGCAGAACTAGCCAAaaagGTGGCAACTGATTCTGGGGCACTCAGCCTGGATAAAGTTTCTGAACTTGTTGTGGAAGGTGAAAACTTGCCTATTGATGTGAATGAGGAACTAAGGATATTAAGAGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCACAAAGGATGATTGCATGTTATCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCATGCCCAAGAGAGGTCTACATTTGTCCCGCATGTAACCCATGTACAGAAGGATTGCCTTCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATTCAAATCCTAGAAAGAAGCAGAAGAGAGACGTGCCCAGTCTCACTTGCAACATGTTTGCAACCAGGAATCAAGATAGTGAGTTTAGGTATTCAACTGGGATAGGATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGAACTTAGAAGTCTTTCTCCATTTCTATGCATACAACGATAA 5499 0.4106 MGKGKPRAVEKGVVGPSPSVTSSTIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDSFTFPTKTQAIHKLQARPAASDSKTFDLEYSRFLQDHSSKKSRKRVVFEGEELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRSGGKISDCAKHVLCQLYREHLYDYENFYNRMNQGSAQSCKKSGHEDHKSDHGVQSGVSKRNHKNVDCSKRKDCKVQEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLRQIPSGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVTDQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQASVFEKVMRSSLPDLFEAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAKYGDIDGRVSSYLKKELLRISDKEKSWREKLWKNGIIKSSCMAPRKCPEYVGTEEDPACIICQQYLYLSAVVCDCRSSTFVCLEHWEHLCECKTEKLRLLYRHSLAELYDLAFSMDKYTSEDKAEYRSVKRQSSCLNALTKKVKGGSITFAQLATEWLLLSRTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCITKIESWLCDRDSSVRKVNLEFVDELLRFSPAPCNEPHYHKLKDYAEEARLLIREVDTALSMCSNMSELELLYSKACGLPIYVKETKKLEGKISSTKTWLDSVRKCISARQPAALHIDVLYKLKAEFVDLQVQLPEIDVLQNLLSQAESCSAQCHDMLDGPMNLKNVGLLLKEWDNFIVDVPELKLLRQYHSDAVSWVSHFNDVLGRVHMQRDQHNAVDELKSIFEEGLSLKIQVDELPLVEIELKKANCREKAVKAHDLKMPLEFIQQLLKEATMLQIEGEKHFVNLSCVLAVAMPWEERAREMLSHEAPILTFEDMIRASENIFVILPSLNDFKDALLEANSWLRNSKPYLISSMCASNSVRKVEDLQMLVSQSKHLKVSLEERGMLELALKNCRIWECEACSLLDAARCLFELDNSLHEINSGLMCKVEDLIARIQSAITSGVSLGFDFNEISKLQASCSTLQWCKRALSFCNCSPSLEDVLEVAEGLSDSPVSGALLKVLIDGFEWLRKALEGISGPQNSRRCKLTDVQDILTDYQTINMTFTAVNCQLEDAIGKHKLWQEQVHKFFGLSSRERSWSSMLQLKEHGDTIAFSCSELELILSEVEKVENWKKRCTDKLGTLVQNENSLCHALEKIKQTLDRSLFIYDKLQDLKEQNLCICCFVDSEDQEFLTCSTCMDRYHLRCVGLTEKDTGIENYKCPYCEILRGEFHYQNGGALLRFGKKRVELKVLTELMSDAEQFCLWIDERDVLSQLVEKALSCKSCLSKIVILASANVDEDISVVSEKLVTAVKASKVAVVYDQHDTCDLELALAKNFWKIHVNRLLNGVPKPTIQQIQKHLKEGLAMDILPEDRHMLKLTNVNCLGLQWAELAKKVATDSGALSLDKVSELVVEGENLPIDVNEELRILRARCMLYCICRKPFDPQRMIACYHCNEWYHFDCMKLPCPREVYICPACNPCTEGLPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNMFATRNQDSEFRYSTGIGCLRWQNRKPFRRAAKKRVELRSLSPFLCIQR 1832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2865 1832 MobiDBLite consensus disorder prediction 200 223 - -
Ssu2g2865 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 873 - -
Ssu2g2865 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 873 - -
Ssu2g2865 1832 CDD ARID 97 185 - -
Ssu2g2865 1832 SUPERFAMILY FYVE/PHD zinc finger 1685 1741 IPR011011 -
Ssu2g2865 1832 SMART ARID_2 92 185 - -
Ssu2g2865 1832 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Ssu2g2865 1832 MobiDBLite consensus disorder prediction 1751 1765 - -
Ssu2g2865 1832 SMART PHD_3 243 289 IPR001965 -
Ssu2g2865 1832 SMART PHD_3 1439 1485 IPR001965 -
Ssu2g2865 1832 SMART PHD_3 1696 1738 IPR001965 -
Ssu2g2865 1832 Pfam jmjN domain 29 62 IPR003349 -
Ssu2g2865 1832 Pfam ARID/BRIGHT DNA binding domain 103 185 IPR001606 GO:0003677
Ssu2g2865 1832 CDD PHD_RSF1 244 288 - -
Ssu2g2865 1832 SUPERFAMILY FYVE/PHD zinc finger 1436 1485 IPR011011 -
Ssu2g2865 1832 Gene3D - 95 198 IPR036431 GO:0003677
Ssu2g2865 1832 MobiDBLite consensus disorder prediction 1751 1777 - -
Ssu2g2865 1832 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Ssu2g2865 1832 SMART bright_3 96 190 IPR001606 GO:0003677
Ssu2g2865 1832 Pfam PHD-finger 243 290 IPR019787 -
Ssu2g2865 1832 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g2865 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 290 IPR013083 -
Ssu2g2865 1832 SMART JmjN_1 27 68 IPR003349 -
Ssu2g2865 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1429 1497 IPR013083 -
Ssu2g2865 1832 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Ssu2g2865 1832 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Ssu2g2865 1832 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Ssu2g2865 1832 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Ssu2g2865 1832 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Ssu2g2865 1832 Pfam PLU-1-like protein 942 1178 IPR013637 -
Ssu2g2865 1832 Pfam PLU-1-like protein 1213 1398 IPR013637 -
Ssu2g2865 1832 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Ssu2g2865 1832 Gene3D Cupin 15 531 - -
Ssu2g2865 1832 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Ssu2g2865 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1683 1739 IPR013083 -
Ssu2g2865 1832 SMART cupin_9 381 547 IPR003347 -
Ssu2g2865 1832 MobiDBLite consensus disorder prediction 198 223 - -
Ssu2g2865 1832 SUPERFAMILY ARID-like 78 200 IPR036431 GO:0003677
Ssu2g2865 1832 ProSitePatterns Zinc finger PHD-type signature. 1440 1484 IPR019786 -
Ssu2g2865 1832 SUPERFAMILY Clavaminate synthase-like 367 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2865 Ssu-Chr2 89756987 89781170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2865 37 92 JUMONJI Transcription Factor Family AT4G20400 50.000 9.03e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu2g2865 PLU-1 7.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2865 K11446 - gmx:100789512 3418.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2865 2 89756987 89781170 Ssu2g2865 2 89756987 89781170 ECH
Ssu6g1464 6 24055333 24062159 Ssu2g2865 2 89756987 89781170 PCT