Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2863 ATGGATGGGAGAGAAGGTATGGCATTTCCTGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGAGGGGTTAGTGGGTCTGGTCCTGGAACTGGAACACACAGTGGAGGGTTTCAACCACCCTCTGGGTTCAGGGCTTTGTCAAATGTCTCTTCAGGCTCTACATTTTCAGTAGAGCCTCAGCCTCAGCGTGCTAGTTTTGGTCATGGCATTAGCATAGGTTCCTCTCCTGATGGTGGAGCTTTAGTACCTTATTCTGGCGAGCccgtgaaaaagaaaagagggagGCCTCGGAAGTATGGTCCTGATGGAACTGTTTCCCTGGGGCTCTCTCCCATGTCTGCCACTGCTAATTCCACCCCGGGGGGTTCGGGCACTCCAGCGGAGAAACGACCCAGAGGGCGCCCGCCTGGAAGTGGAAGGAAGCAACAGCTAGCCTCTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATCACTGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAGCAGAGACCAAGGGCTGTGTGCATCTTAACTGGAACTGGGACAGTTTCTTCAGTTACTCTGCGCCAGCCAGCTTCTACTAGTGTCAGCGTTACTTATGAGGGccgatttcaaattttatgcttGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCTCGCAATAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCCAGGCTTATTGCTGCAAGCCCAGTGCAGGTGGTTGCATGCAGTTTTGTATATGGGGGCTCTAAGCCAAAGACTAAACAAGGGACCACTACAAAAGATAGCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCAGCCAGTGCTCCACCTAATCAAAACTACACCTCTTCTCCTGCCCCAGGCATTTGGCCTGCATCAAGGCCAGTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1041 0.489 MDGREGMAFPGGSAPYYMQHRGGGVSGSGPGTGTHSGGFQPPSGFRALSNVSSGSTFSVEPQPQRASFGHGISIGSSPDGGALVPYSGEPVKKKRGRPRKYGPDGTVSLGLSPMSATANSTPGGSGTPAEKRPRGRPPGSGRKQQLASLGEWMNSSAGLAFSPHVITVGVGEDIVAKLLSFSQQRPRAVCILTGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEEGGPRNRTGGMSVSLSSPDGHVIGGGVARLIAASPVQVVACSFVYGGSKPKTKQGTTTKDSSSEPQSSDKLASPASAPPNQNYTSSPAPGIWPASRPVEVKSAHPHTGIDLTRG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2863 346 MobiDBLite consensus disorder prediction 29 63 - -
Ssu2g2863 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 277 - -
Ssu2g2863 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 346 - -
Ssu2g2863 346 MobiDBLite consensus disorder prediction 282 321 - -
Ssu2g2863 346 MobiDBLite consensus disorder prediction 110 126 - -
Ssu2g2863 346 CDD DUF296 163 275 IPR005175 -
Ssu2g2863 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Ssu2g2863 346 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Ssu2g2863 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
Ssu2g2863 346 MobiDBLite consensus disorder prediction 1 146 - -
Ssu2g2863 346 MobiDBLite consensus disorder prediction 282 346 - -
Ssu2g2863 346 Gene3D - 163 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2863 Ssu-Chr2 89724630 89728173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2863 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 51.688 7.59e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2863 - - gmx:100790569 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2863 2 89724630 89728173 Ssu2g2863 2 89724630 89728173 ECH
Ssu2g2863 2 89724630 89728173 Ssu5g3051 5 77930303 77933697 PCT