Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2858 ATGTCACTTAAAGATTTCTATGAATTTGCTGCTGCAACAGAGGTGAACAGCGAACATCCAATAGCCAAGGCTATTGTTGAGCACGCCAAAAAGATCATAGAAGAAGAACAGAATCATCCTTGGCTAGAAGCACGCGACTTTGTTTCTGTTTCAGGCCAAGGAGTTAAGGCCATTGTTCTAAACAAGGAACTAATGGTTGGGAATAAAAAGATGATGCTGGACCATGGCATAGCCGTTTCAGAAGATGCTGAAGAAATATTGGCAGAAGCTGAAAGCATGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAATTTTGGCTGTATCTGATCCACTGAAACCTGGTGCTAAAGAAGTTGTTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACGGGTGATAACTGGGGAACCGCCAAGTCTATAGCCAGGCAAGCTGGTATTGAAACTGTCATGGCAGAGGTACAACCTGAGACTAAAGcgactaaaataaaagaattgcaGACTTCTGGCCACACGGTGGCAATGGTGGGAGATGGCGTCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATATAATAATTGCCATTGACCTTGCAAACAAAACTTTCTCTCGTATACGTCTAAACTACATTTGGGCTTTGGGTTACAATTTGCTAGCCATCCCAATTGCTGCGGGCATCCTTTATCCCTCCACCAGATTCCGATTACCACCGTGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTTGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTAGGAAGCTAAACAACTTGGAGATAAATGgtataaaaattgaatag 939 0.4271 MSLKDFYEFAAATEVNSEHPIAKAIVEHAKKIIEEEQNHPWLEARDFVSVSGQGVKAIVLNKELMVGNKKMMLDHGIAVSEDAEEILAEAESMAQTGILVSLDGEVAGILAVSDPLKPGAKEVVSILNSMKIKSIMVTGDNWGTAKSIARQAGIETVMAEVQPETKATKIKELQTSGHTVAMVGDGVNDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYIWALGYNLLAIPIAAGILYPSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPRKLNNLEINGIKIE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2858 312 Gene3D - 1 91 IPR023299 GO:0000166
Ssu2g2858 312 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 304 - -
Ssu2g2858 312 Pfam haloacid dehalogenase-like hydrolase 1 197 - -
Ssu2g2858 312 Gene3D - 93 250 IPR023214 -
Ssu2g2858 312 PRINTS P-type cation-transporting ATPase superfamily signature 130 140 - -
Ssu2g2858 312 PRINTS P-type cation-transporting ATPase superfamily signature 206 218 - -
Ssu2g2858 312 PRINTS P-type cation-transporting ATPase superfamily signature 108 119 - -
Ssu2g2858 312 PRINTS P-type cation-transporting ATPase superfamily signature 183 202 - -
Ssu2g2858 312 PRINTS H+-transporting ATPase (proton pump) signature 183 199 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2858 312 PRINTS H+-transporting ATPase (proton pump) signature 214 239 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2858 312 PANTHER ATP7, ISOFORM B 1 304 - -
Ssu2g2858 312 SUPERFAMILY HAD-like 50 289 IPR036412 -
Ssu2g2858 312 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 6 262 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2858 Ssu-Chr2 89688907 89690259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2858 1 312 Primary Pumps ATPases AT1G63440 73.077 1.32e-165 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2858 K17686 - gmx:100817431 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2858 2 89688907 89690259 Ssu2g2858 2 89688907 89690259 ECH