Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2857 ATGGGTATCAAAATTGAGGGTTGGGACTGCATGAGTGGCTTGCAGTGCTGTGGGAACCTGTCCCCTCAGCCACACTATCCTTCGATGGCGAGGGTGGAAGCAAAGAAGGTGCTGGAGGAAGGATCAGAGGCCAAAGTGGTTTTCAGCGTTATGGGAATGACGTGCGCTGCTTGCGCTGGATCGGTGGAGAAAGCCGTCAAACGCTTACCCGGGATTCGCCAGGCCGTTGTTGATGTCTTGAACGATAAAGCTCAGGTTCTTTACTACCCGCAAATGGTTAATGAGGAGAGGATACGTGAGGCCATTGAAGATGCGGGATTTGAGGCCAAAGTCATGGAAGAAGACTCCAACGACACCTCCACTCAAATATGCCGAATACACGTACGGGGCATGACTTGTACTTCTTGCTCCTCCACTATCGAATCAGCTTTGCAATCCCTTCGTGGGGTGCATAAAGCACGAGTGGCCTTGGCAACCAAAGAAGCAGAAGTTCGCTATGACCCTAAGATTGTCACACACAACCAGCTAATGGAAGCTATACAAGACACCGGGTTTGAGGTAGTACTAATAAGCACGAGGGAACACATAAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGAGCAATCCATGAATGCCATTGAACACTCTCTCCATGCACTCCCAGGTGTTGAAACCATAGACATATATGCAGACATTAACAAAGTTGCCATAACTTATAAACCATACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCTCAGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAATGATGCAGGAAAAGAAGCACAAAGGCAAAAGGAAATTAACCGGTACTTCAAGTTGTTCATATGGAGTTTGGCTTTCACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTGTTGGATATTAAAGTTGTTAACATGCTGGATATTGGACTTCTCTTGAGGTGTGAGTTTGCGACCCCGGTGCAGTTTATCATTGGGAGAAGATTCTATGTTGGGGCATATAAAGCATTGCGCAAAGGTTCTGCTAACATGGATGTGTTGATAGCCTTAGGGACAAATGCAGCCTATTTCTATTCTCTCTATGTTGTGGAAAGAGCTGCTTTCTCTCGGCATTTCAAAGGCAGTGATTTCTTTGAGACCAGCTCTATGCTTATTTCGTTTATTCTACTGGGGAAGTATTTGGAAGTGTTGGCAAAGGGGAAGACATCGCAGGCCATTGCAAAGCTTATGGACTTGACACCCGGGACAGCAACCTTGTTAACTCAAGACGATGAGGGAAATGTCGTTTGTGAACAACAAATTGATAGCCGGTTGATACAAAAGGACGATGTGATCAAGGTTGTTCCCGGTGCAAAAGTAGCATCAGATGGTTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACTGGAGAGGCAAGGCCCGTAGCAAAGAGGAAAGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCACGTTAAGGTGTCAAGGGTTGGATCAGAGAGTGCCCTCTCCCAGATTGTTCGACTTGTTGAGTCTGCCCAGATGGCTAAAGCTCCCGTCCAAAAATTTGCAGAtcatatttctaaatattttgttCCTCTGGTCATTGTACTTTCTCTTTCAACATGGCTTTCCTGGTTTCTAGCTAGAAAGTTACATGCATACCCGAAATCTTGGATACCATCCTCCATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATTTCTGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACGGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGCAAGCATTAG 1914 0.4514 MGIKIEGWDCMSGLQCCGNLSPQPHYPSMARVEAKKVLEEGSEAKVVFSVMGMTCAACAGSVEKAVKRLPGIRQAVVDVLNDKAQVLYYPQMVNEERIREAIEDAGFEAKVMEEDSNDTSTQICRIHVRGMTCTSCSSTIESALQSLRGVHKARVALATKEAEVRYDPKIVTHNQLMEAIQDTGFEVVLISTREHISKIELKIDGIKNEQSMNAIEHSLHALPGVETIDIYADINKVAITYKPYMTGPRTFIEVIESSGSGCFKAVIFPNDAGKEAQRQKEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDIKVVNMLDIGLLLRCEFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERAAFSRHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPGTATLLTQDDEGNVVCEQQIDSRLIQKDDVIKVVPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDMVIGGTVNENGVLHVKVSRVGSESALSQIVRLVESAQMAKAPVQKFADHISKYFVPLVIVLSLSTWLSWFLARKLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGKH 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2857 637 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase 1 signature 146 167 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Ssu2g2857 637 CDD HMA 128 187 IPR006121 GO:0046872
Ssu2g2857 637 Gene3D - 416 538 - -
Ssu2g2857 637 ProSitePatterns Heavy-metal-associated domain. 128 157 IPR017969 GO:0046872
Ssu2g2857 637 Gene3D - 121 192 - -
Ssu2g2857 637 PANTHER ATP7, ISOFORM B 23 636 - -
Ssu2g2857 637 ProSitePatterns Heavy-metal-associated domain. 50 79 IPR017969 GO:0046872
Ssu2g2857 637 PRINTS Copper-transporting ATPase signature 346 365 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase signature 398 417 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase signature 418 436 - -
Ssu2g2857 637 PRINTS Copper-transporting ATPase signature 557 571 - -
Ssu2g2857 637 SUPERFAMILY HMA, heavy metal-associated domain 120 193 IPR036163 GO:0046872
Ssu2g2857 637 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 623 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2857 637 Gene3D - 40 112 - -
Ssu2g2857 637 Pfam Heavy-metal-associated domain 47 108 IPR006121 GO:0046872
Ssu2g2857 637 Pfam Heavy-metal-associated domain 126 186 IPR006121 GO:0046872
Ssu2g2857 637 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 23 636 - -
Ssu2g2857 637 Pfam E1-E2 ATPase 430 626 - -
Ssu2g2857 637 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Ssu2g2857 637 CDD HMA 47 110 IPR006121 GO:0046872
Ssu2g2857 637 ProSiteProfiles Heavy-metal-associated domain profile. 198 259 IPR006121 GO:0046872
Ssu2g2857 637 SUPERFAMILY Calcium ATPase, transmembrane domain M 398 633 IPR023298 -
Ssu2g2857 637 Gene3D - 193 267 - -
Ssu2g2857 637 ProSiteProfiles Heavy-metal-associated domain profile. 123 189 IPR006121 GO:0046872
Ssu2g2857 637 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Ssu2g2857 637 TIGRFAM TIGR00003: copper ion binding protein 45 109 IPR006122 GO:0005507
Ssu2g2857 637 TIGRFAM TIGR00003: copper ion binding protein 126 188 IPR006122 GO:0005507
Ssu2g2857 637 SUPERFAMILY HMA, heavy metal-associated domain 41 115 IPR036163 GO:0046872
Ssu2g2857 637 SUPERFAMILY HMA, heavy metal-associated domain 193 262 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2857 Ssu-Chr2 89681546 89687929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2857 44 636 Primary Pumps ATPases AT1G63440 71.022 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2857 K17686 - gmx:100817431 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2857 2 89681546 89687929 Ssu2g2857 2 89681546 89687929 ECH
Ssu2g2857 2 89681546 89687929 Ssu5g3046 5 77890047 77897315 PCT