Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2856 ATGGCGAAGTTGTTAGCGTTGAGTTGCTGGCGAAACGAGGGATGGGGCAACCTCTCGCCGCGACCTCACTACCCGTCGATGCCCAAATACCCCAAGGGTGGCACCGTCGACGAGCTTTCAGAGTCCACCGCTCTTCTCTCCGTCGTCGGAATGAGTTGCGCCGCCTGCGCCGGATCCGTCGAGAAGGCCGTCAAACGCCTCCCCGGGATTCGCGAAGCCGCCGTCGACGTCCTCAACAACCGAGCCCACGTCATCTTCTTCCCCTCCTTCGTTAACgaGGAGACAATTCGCGAGGCAATTGAAGACGCCGGTTTCGAAGCCGCTTTGCTCGCAGGCGCCACGCATGACAAATCCGTTCAAGTGTGCCGCATACAAATCAAAGGAATGACCTGCACGTCCTGTTCCTCCACGCTCGAATCCGTTCTGCAGGCCATTCACGGCGTGCTCGAAGCTCGCGTGGGCCTCGCAACCGAAGAGGCCCAAGTCCACTACAACCCAAACCTCGTCACCCACAACCAGATTCTACAAGCCATAGAAGATTCTGGATTCGAGGCCGAGCTTATTAGTTCAAGCGAAGACTTCAGCACGATAGACCTGCACGTGGAAGGTGCCGCAACTGCAACCGACGACTCCGTGAAACTAATCCAAGATTCTCTGCAGGCACTCCCAGGAGTCCTAGTGGTGGACATAACCGCggaattaaacaaaatatcgGTTTCTTACAAACCGGACATGACAGGTCCGAGAAATTTCATTAACGCGATTGAGGAAACAGGGCATGGGAATTTCAAGGCAAAAATATATCCTACAGAAGAGGGACAAAAAGATTCTCACAGACGCGAGGAAACTAGAGAGTATTATAGATCTTTCTTATGGAGCTTGGTGTTTACCGTGCCCGTGTTTCTAACCTCCATGGTTCTTATGTATGTTCCTGGAATTAAGGATTTGCTTGATGCGAAACTTGTGAACATGCTTACCGTGGGGGAGGTTGCACGGTGGGTGCTGGCCACGCCGGTTCAGTTCGTTCTCGGGTGGCGATTTTACTATGGTTCTTATAAGTCGTTGCGGCGTGGCTCTGCGAACATGGACGTTCTAATTGCGTTGGGAACAAATGCCGCGTATTTCTATTCGGTGTACTCTGTTTTGAGGGCTGCCACATCGCGTCATTTCGAGGGGAATGATTTCTTCGAGACGAGTGCGATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTTGAGATTCTGGCGAAGGGGAAGACGTCGGATGCGATTGCGAAGCTCATGAACTTGACTCCGGACACGGCGGTTCTGTTGAGTCTGGACGGTGACGGGAATGTCGTTGGGGAGGAGGAGATTGACAGCAGGTTGGTGCAGAAGAATGATGTGATTAAGGTTGTTCCTGGGGCGAAAGTGGCTTCGGACGGCTTTGTTGTGTGGGGGCAGAGTCACGTGAATGAGAGCATGATAACAGGGGAGGCGCGTCCCGTGGCGAAGAGGAAAGGAGATGCTGTTATTGGAGGGACTGTGAATGAGAATGGAGTGTTGCATGTTAAGGCAACAAAGGTGGGATCGGAGAGTGCTCTTTCACAGATTGTTCGGCTTGTTGAGTCCGCACAGATGGCCAAAGCACCTGTGCAGAAGTTGGCTGATCGCATTTCCAAATACTTTGTGCCTCTgGTGATTGTAATCTCGTTCACTACTTGGCTTGCTTGGTTTTTAGCTGGAAGATTTCATGCTTACCCTAAGTCTTGGATACCGTCTTCCATGGACGGCTTTGAGCTTGCTTTGCAGTTTGGGATATCTGTCATGGTCATAGCCTGCCCCTGTGCTTTGGGTTTAGCGACGCCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGGCAAGCGTTAGAGAGTGCACATAAGGTGAACTGCATTGTTTTTGATAAGACCGGTACTCTCACTGTTGGGAAACCTGTCATAGTGAAAACAGAACTATTGACAAAAATGGTGCCCCAAGAATTCTATGAACTTGTGGCGGCCGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTTGAGTATGCCAAAAGATTTAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTGTTTCCATTACGGGACATGGAGTAAAGGCCACTGTTCATAACAAGGAAATAATTGTGGGTAATAAGAGCTTGTTGGCTGACCATAACATTGCAATTCCTGTTGTTGCTGAAGATATACTTGCTGAAGCCGAAAAGACGGCTCAAACAGGAATTTTAGTATCTATAAATGGGAAAGTAGCTGGGGTTTTAGCAGTATCCGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCCATGAAAATTAGGAGCATCATGGTGACTGGAGACAACTTCGGAACTGCTAGTTCTATTGCAAGGGAAGTAGGAATTGAAAGTGTCATTGCTGAGGCCAAACCGGATCAGAAAGCAGAGAAAGTGAAAGATTTGCAGGCTTCTGGGCACACTGTGGCTATGGTGGGGGATGGTATCAATGATTCACCTGCACTTGTGGCTGCGGATGTGGGAATGGCAATCGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAGGATGTCATAACTGCCATCGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTGAACTACTTTTGGGCTTTGGGTTATAACTTGCTTGGCATCCCAATCGCTGCTGGAGCTCTTTTCCCCTTTACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCAGTCAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGAAGACCTAAGAAGCTGGACAACCTTGAGATACGAGGCATAAGGATCGAATCAGTGATATGA 2958 0.4922 MAKLLALSCWRNEGWGNLSPRPHYPSMPKYPKGGTVDELSESTALLSVVGMSCAACAGSVEKAVKRLPGIREAAVDVLNNRAHVIFFPSFVNEETIREAIEDAGFEAALLAGATHDKSVQVCRIQIKGMTCTSCSSTLESVLQAIHGVLEARVGLATEEAQVHYNPNLVTHNQILQAIEDSGFEAELISSSEDFSTIDLHVEGAATATDDSVKLIQDSLQALPGVLVVDITAELNKISVSYKPDMTGPRNFINAIEETGHGNFKAKIYPTEEGQKDSHRREETREYYRSFLWSLVFTVPVFLTSMVLMYVPGIKDLLDAKLVNMLTVGEVARWVLATPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSRHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLSLDGDGNVVGEEEIDSRLVQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDAVIGGTVNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKLADRISKYFVPLVIVISFTTWLAWFLAGRFHAYPKSWIPSSMDGFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVKTELLTKMVPQEFYELVAAAEVNSEHPLAKAIVEYAKRFRDEENPSWPEARDFVSITGHGVKATVHNKEIIVGNKSLLADHNIAIPVVAEDILAEAEKTAQTGILVSINGKVAGVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNFGTASSIAREVGIESVIAEAKPDQKAEKVKDLQASGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNLLGIPIAAGALFPFTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGIRIESVI 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2856 985 Gene3D - 120 190 - -
Ssu2g2856 985 Pfam haloacid dehalogenase-like hydrolase 645 867 - -
Ssu2g2856 985 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 362 962 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu2g2856 985 SUPERFAMILY HMA, heavy metal-associated domain 116 190 IPR036163 GO:0046872
Ssu2g2856 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Ssu2g2856 985 CDD HMA 124 186 IPR006121 GO:0046872
Ssu2g2856 985 SFLD C1.7: P-type atpase like 631 905 - -
Ssu2g2856 985 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Ssu2g2856 985 Pfam E1-E2 ATPase 430 627 - -
Ssu2g2856 985 TIGRFAM TIGR00003: copper ion binding protein 124 185 IPR006122 GO:0005507
Ssu2g2856 985 TIGRFAM TIGR00003: copper ion binding protein 46 107 IPR006122 GO:0005507
Ssu2g2856 985 CDD HMA 46 108 IPR006121 GO:0046872
Ssu2g2856 985 SUPERFAMILY HMA, heavy metal-associated domain 42 109 IPR036163 GO:0046872
Ssu2g2856 985 Gene3D - 38 110 - -
Ssu2g2856 985 PANTHER ATP7, ISOFORM B 7 973 - -
Ssu2g2856 985 ProSitePatterns Heavy-metal-associated domain. 126 155 IPR017969 GO:0046872
Ssu2g2856 985 ProSitePatterns Heavy-metal-associated domain. 48 77 IPR017969 GO:0046872
Ssu2g2856 985 Gene3D - 656 733 IPR023299 GO:0000166
Ssu2g2856 985 Gene3D - 734 784 IPR023299 GO:0000166
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 853 872 - -
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 778 789 - -
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 800 810 - -
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 876 888 - -
Ssu2g2856 985 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Ssu2g2856 985 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Ssu2g2856 985 SUPERFAMILY HMA, heavy metal-associated domain 192 261 IPR036163 GO:0046872
Ssu2g2856 985 SFLD p-type atpase 631 905 IPR044492 -
Ssu2g2856 985 SUPERFAMILY HAD-like 648 959 IPR036412 -
Ssu2g2856 985 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 7 973 - -
Ssu2g2856 985 Gene3D - 417 539 - -
Ssu2g2856 985 Gene3D - 616 910 IPR023214 -
Ssu2g2856 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 402 931 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g2856 985 CDD P-type_ATPase_Cu-like 288 963 - -
Ssu2g2856 985 Pfam Heavy-metal-associated domain 124 184 IPR006121 GO:0046872
Ssu2g2856 985 Pfam Heavy-metal-associated domain 47 106 IPR006121 GO:0046872
Ssu2g2856 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 394 928 IPR023298 -
Ssu2g2856 985 Gene3D - 196 259 - -
Ssu2g2856 985 PRINTS Copper-transporting ATPase 1 signature 144 165 - -
Ssu2g2856 985 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Ssu2g2856 985 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Ssu2g2856 985 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Ssu2g2856 985 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Ssu2g2856 985 ProSiteProfiles Heavy-metal-associated domain profile. 215 264 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2856 Ssu-Chr2 89667622 89671897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2856 3 984 Primary Pumps ATPases AT1G63440 74.346 0.0 1501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2856 K17686 - gmx:100816893 1711.04