Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2854 ATGTTTAGAAAACTCAGGGAAAAGATGAAGCCTTGTACTTCATTGTTGTTTCTCAGCTTGATTTCCACGCTCTCTTTTGTGGCTTCTGACACTGTGCCCTCAAACGAAGTTTGGGCGCTTAGGAGCTTCAAAGAAGCTGTCTATGAAGACCCATATCATGTTTTATCCAATTGGGATACGGTGGAATCAGATCCTTGTAACTGGTTTGGCGTCTCATGCACTATGTCTCGAGATCATGTCATCAAGCTAAACATATCAGGATCATCATTAAAGGGGTTTCTTGCACCAGAGTTGGGGCAGATCACCTACTTGCAAGAACTAATTTTGCATGGCAACAATTTCATTGGAACAATACCTGTAGAATTGGGTGTGTTGAAATCTCTCAAGGTGTTGGATTTGGGAAGGAATCAGTTAACGGGACCAATTCCTCCAGAGATTGGAAATTTAACCCAAGTTGTGAACATAAACTTGCAGTCCAATGGGTTGACTGGTAGGCTACCTCCGGAGCTTGGAAATTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAGGCTTCAAGGACCTGTTCCTGCTGGTGGTAGCTCAAATTTTGCTTCAAATATGCATGGGAtGTATGCATCAAAAGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGActtctcatataattttttagttggtaGCGTACCCAAATGCTTGGAGTATCTTCCAAGGTTAAGCTTTCAAGGCAACTGCCTTCAGAGCAAGGATTTAAAGCAGCGGCCTTCTATACAGTGTGCGGGTGCTTCACCCGCCAAGAGCCAGCCAGTGGTGAACCCAAACCACCAACCTACTGAATATGTGACCAAGCATCATGGAGCATCGAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGAACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAGATCATCTATCATCATTCCTTGGAAAAAATCTACAAGCCAGAAAGATCATATGGTAGTATATATAGACCCTGACATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTAGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCGGATAGTGTGGTCTACAAGGGAACCATGAAAGGTGGGCCTGAGATTGCTGTTATTTCCCTCTGCATGAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATATAGGAAAACTACTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACCTACATTGTTATGAAGAAGGATGTCAATTCTCTTGGATACGGCGTATGAAGATTACCTTAGGCATTGCACGTGGACTCAAGTATTTGCATACAGAAGTGGAGCCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTCTACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAACGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTTCTATCTGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACATTTATGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTCTAAGGACAAAGGGTACTTGGTGGACTGGGCCAAGGACTACCTTGAAATGCCAGATGAAATGTCACGTGTGGTGGATCCTGAACTGAAACATTTTAGATACGATGACCTCAAAGTGATATGCGAGGTAATAACTCTTTGTGTCAACCGTGATACAACTGTTCGTCCATCTATGCGAGAATTATGCAGCATGCTGGAGAGCAGAATTGACACATCAGTAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCTTAA 2010 0.4264 MFRKLREKMKPCTSLLFLSLISTLSFVASDTVPSNEVWALRSFKEAVYEDPYHVLSNWDTVESDPCNWFGVSCTMSRDHVIKLNISGSSLKGFLAPELGQITYLQELILHGNNFIGTIPVELGVLKSLKVLDLGRNQLTGPIPPEIGNLTQVVNINLQSNGLTGRLPPELGNLRYLQELRLDRNRLQGPVPAGGSSNFASNMHGMYASKENVTGFCRSSQLKVADFSYNFLVGSVPKCLEYLPRLSFQGNCLQSKDLKQRPSIQCAGASPAKSQPVVNPNHQPTEYVTKHHGASKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKRSSIIIPWKKSTSQKDHMVVYIDPDMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCMKEEHWTGYLELYFQREVADLARLNHENIGKLLGYCREDTPFTRMLVFDYASNGTLHDHLHCYEEGCQFSWIRRMKITLGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGSICVLPNSLEARHLDTKGNIYAFGVLLLEIISGRPPYSKDKGYLVDWAKDYLEMPDEMSRVVDPELKHFRYDDLKVICEVITLCVNRDTTVRPSMRELCSMLESRIDTSVSVELKSSSLAWAELALLS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2854 669 Pfam Protein tyrosine and serine/threonine kinase 374 643 IPR001245 GO:0004672|GO:0006468
Ssu2g2854 669 MobiDBLite consensus disorder prediction 263 285 - -
Ssu2g2854 669 Gene3D Ribonuclease Inhibitor 35 148 IPR032675 -
Ssu2g2854 669 SUPERFAMILY Protein kinase-like (PK-like) 354 644 IPR011009 -
Ssu2g2854 669 Gene3D Phosphorylase Kinase; domain 1 345 451 - -
Ssu2g2854 669 ProSiteProfiles Protein kinase domain profile. 370 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2854 669 PANTHER PROTEIN MALE DISCOVERER 2 14 667 - -
Ssu2g2854 669 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Ssu2g2854 669 SUPERFAMILY L domain-like 34 246 - -
Ssu2g2854 669 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 667 - -
Ssu2g2854 669 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Ssu2g2854 669 Gene3D Transferase(Phosphotransferase) domain 1 452 659 - -
Ssu2g2854 669 Gene3D Ribonuclease Inhibitor 149 271 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2854 Ssu-Chr2 89656938 89661088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2854 15 644 Receptor kinase-like Gene Family AT2G01210 27.639 1.73e-55 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu2g2854 PK_Tyr_Ser-Thr 2.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2854 - - gmx:100794714 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2854 2 89656938 89661088 Ssu2g2854 2 89656938 89661088 ECH
Ssu2g2854 2 89656938 89661088 Ssu5g3041 5 77853495 77857682 PCT