Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2853 ATGGTTAGTAACACGAACAACAGAAACAAGGAGAGAGACCTTGAGCTTTTCTTTGAGGATGACATCAACGAAGGTGCACAACATGATGTTGAAACTGCCAAGTTAGAGAGTGAGAGTAGCAGTGATGATGAGGGAAACGATACAACGCAGCGTCACTCTTTCACTTCTCAGCAATGGCCTCAAAGTTACAAAGAGTCTACAGATTCTTACACACTTGCTGCAACTCcaaattttgaatcaattcTACGAGGACCAAGTTTTATATATTCCAGTTTTGACAATCATTCAAAGAGTGACTTAGACATAGATGGAAAGACTCCTTTTCTCTCTGGTCACGAAGGCATTACCCAATCAACATTGTGGAAGGAAGGTTCAGTGCAAAGGCATTTAACTGGCGAATTGCCAATTGGTCATGGATGCAGCTTCATTCAAACAGTTTTCAATGCCACTAATGTGATGGCTGGAGTTGGCATTCTGTCTACACCTTATACATTGAAAGAAGCTGGCTGGGTTAGCATGGTGTTGATGGTTCTTTTTGCAGTCATTTGTTGCTATACAGCCACCCTTATGAGATACTGCTTTGAAAGCAAAGAAGGAATCAATAGCTACCCGGATATAGGAGAAGCTGCATTTGGAAAATATGGTCGTGTTATTGTATCAATCATTTTGTACACTGAATTATATTCGTGTTGTATGGAAATCATCACCCTGGAAGGAGATAACCTCACTAGGCTATTTCCGGGAACATCCTTAAATTTGGGTAGTTTCCAGTTAGACTCTGTGCACTTGTTTGGAATTTTGGCTGCACTTATTATTGCCCCGACTGTTTGGCTGAAGGATCTCCGTATAATCTCTTTTTTGTCAGCTGGAGGGGTTTTTGCAACATTTTTGATTGTTATCTGTGTGTTTTGTGTTGGGACAATAGACGGTGTTGGATTCCATCACACTGGTCAATTGGTCAGTTGGAGTGGTATTCCATTAGCTATTGGTATCCATGGGTTTTGCTTTGCAGGACATTCAGTTTTTCCAAATATTTACCAATCTATGGCTGACAAAAGACAATTTACTAAAGCAGTAATAATATGTATTGTATTGTCTGTTACAATATATGGAGGTGTTGCAATCATGGGATTTCTCATGTTTGGTGATGGCACTTTGtctcaaataacattaaatatgcCACGAAGTGCATTTGCTTCCAAGGTTGCATTGTGGACAACAGTACACGAGGCACGGAAAACCACATGGTTAAATGTACACCTCAAATTTGACGTATATCTAAACTTACTCCTTATGGGGAGACATGGAAAACCTCATGCATCGGTTTGGGATTCTTATAATACCGTCGCATTCATTAATTCACAGCTGCTTTTGTACTTTTCGAAAATATACGTTGTTGCATTGAGCGTCGTAATTGCTGCATTTGGAGTCATTTGTGGAATTCTTGGAACATATTCATCTGCGCTGAATATTGTGAAGAAGGTGGGACCCCGCTACGGATTCACGTATAATCTCTGCAATGCTTTACGCCAAAAGGGAATCTACACTTTCAGAGATGAGGAGGAGGTTCGGATCGGGGCAGAAATCAGACCCGCTCTTCTGAAGGCAATCGAAAATTCTAGAATGTCAATGGTTGTTTTCTGTAAAGACTACTCATCTTCCACTTGGTGCCTCAATGAGCTTGCTCAGATCGTTAACTGTTATAACAAAGGGAAACAGGTTGTGGCCATATTTTACAAAGTGGAACCTTCTGATGTACGAGACAAAAAAAATTCGTATGCAGAAGCGATGATTGAGAATGAAGAGAGATTCGGAAAAGACTCCGAGAAGGTGAAAAAAATGGAGGCAAGCTTTGTCTAA 1860 0.3989 MVSNTNNRNKERDLELFFEDDINEGAQHDVETAKLESESSSDDEGNDTTQRHSFTSQQWPQSYKESTDSYTLAATPNFESILRGPSFIYSSFDNHSKSDLDIDGKTPFLSGHEGITQSTLWKEGSVQRHLTGELPIGHGCSFIQTVFNATNVMAGVGILSTPYTLKEAGWVSMVLMVLFAVICCYTATLMRYCFESKEGINSYPDIGEAAFGKYGRVIVSIILYTELYSCCMEIITLEGDNLTRLFPGTSLNLGSFQLDSVHLFGILAALIIAPTVWLKDLRIISFLSAGGVFATFLIVICVFCVGTIDGVGFHHTGQLVSWSGIPLAIGIHGFCFAGHSVFPNIYQSMADKRQFTKAVIICIVLSVTIYGGVAIMGFLMFGDGTLSQITLNMPRSAFASKVALWTTVHEARKTTWLNVHLKFDVYLNLLLMGRHGKPHASVWDSYNTVAFINSQLLLYFSKIYVVALSVVIAAFGVICGILGTYSSALNIVKKVGPRYGFTYNLCNALRQKGIYTFRDEEEVRIGAEIRPALLKAIENSRMSMVVFCKDYSSSTWCLNELAQIVNCYNKGKQVVAIFYKVEPSDVRDKKNSYAEAMIENEERFGKDSEKVKKMEASFV 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2853 619 MobiDBLite consensus disorder prediction 20 62 - -
Ssu2g2853 619 Pfam Transmembrane amino acid transporter protein 139 487 IPR013057 -
Ssu2g2853 619 Pfam TIR domain 499 604 IPR000157 GO:0007165
Ssu2g2853 619 Gene3D - 493 618 IPR035897 -
Ssu2g2853 619 ProSiteProfiles TIR domain profile. 483 615 IPR000157 GO:0007165
Ssu2g2853 619 SUPERFAMILY Toll/Interleukin receptor TIR domain 499 613 IPR035897 -
Ssu2g2853 619 PANTHER AMINO ACID TRANSPORTER AVT1A 32 415 - -
Ssu2g2853 619 MobiDBLite consensus disorder prediction 20 49 - -
Ssu2g2853 619 PANTHER OS05G0424000 PROTEIN-RELATED 32 415 - -
Ssu2g2853 619 SMART till_3 485 617 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2853 Ssu-Chr2 89611155 89621075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2853 6 408 Amino Acid or Auxin Permease AAAP Family AT2G41190 60.333 2.24e-166 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2853 K15015 - gmx:100816368 733.406