Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2852 ATGGTTAGTAACACGAACAGTAGCAACAAGGAGAGAGACCTTGAGCTTTTCTTTGAGGATGATATCAACGAAGGTGCACAACATGATTTTGAAACTGCCAAGTTAGAGAGTGAGAGTAGCAGTGATGATGAGGGAAACGATACAACGCAGCGTCACTCTTTCACTTCTCAGCAATGGCCTCAAAGTTACAAAGAGACTACAGATTCTTACACACTTGCTGCAACTCcaaattttgaatcaattcTACGAGGACCAAGTTTTATATATTCCAGTTTTGACAATCATTCAAAGAATAACTTAGACATAGATGGAAAGACTCCTTTTCTCTCTGGTCACGAAGGCATTACCCAATCAACATTGTGGAAGGAAGGTTCAGTTGAAAGGCATTTAACTGGCGAATTGCCAATTGGTCATGGATGCAGCTTCATTCAAACAGTTTTCAATGCGACTAATGTGATGGCTGGAGTTGGCATTCTGTCTACACCTTATACATTGAAAGAAGCTGGTTGGGTGAGCATGGTGTTGATGGTTCTTTTTGCAGTCATTTGTTGCTATACAGCCACCCTTATGAGATACTGCTTTGAAAGCAGAGAAGGAATCACTAGCTACCCAGATATAGGAGAAGCTGCATTTGGAAAATATGGTCGTATTATTGTATCAATCATTTTGTATACTGAATTATATTCGTGTTGTGTGGAATTCATCACTTTGGAAGGAGATAACCTCACTGGGCTATTTCCGGGAACATCCTTAGATTTCGGTAGTTTCCAGTTAGACTCTGTGCACTTATTTGGAAATTTGGCTGCACTTATTATTATCCCGACTGTTTGGCTGAAGGATCTTCGCATAATTTCTTTTCTGTCAGCTGGAGGGGTTTTTGCAACATTGTTGATTGTGATCTGTGTGTTTTGTGTTGGGACAATGGATGGTGTTGGATTCCGTCACAATGGTCAATTGGCCAATTGGAGTGGCATTCCATTAGCTATTGGTATCCATGGTTTTTGCTTTGCAGGTCATTCTGTTTTTCCAAATATTTACCAATCTATGGCTGACAAAAGACAATTTACTAAAGCATTGATAATATGTTTTGTATTATCTGTTACAATATATGGAGGTGTTGCAATCATGGGATTTCTCATGTTTGGTGATGGCACTTTGtctcaaataacattaaatatgcCACAAAGTGCATTTGCTTCCAAGGTTGCATTGTGGACAACAGTAATTAACCCATTCACTAAATATCCTTTTTGCCACAAATTAGCTTTTTTATGA 1275 0.3812 MVSNTNSSNKERDLELFFEDDINEGAQHDFETAKLESESSSDDEGNDTTQRHSFTSQQWPQSYKETTDSYTLAATPNFESILRGPSFIYSSFDNHSKNNLDIDGKTPFLSGHEGITQSTLWKEGSVERHLTGELPIGHGCSFIQTVFNATNVMAGVGILSTPYTLKEAGWVSMVLMVLFAVICCYTATLMRYCFESREGITSYPDIGEAAFGKYGRIIVSIILYTELYSCCVEFITLEGDNLTGLFPGTSLDFGSFQLDSVHLFGNLAALIIIPTVWLKDLRIISFLSAGGVFATLLIVICVFCVGTMDGVGFRHNGQLANWSGIPLAIGIHGFCFAGHSVFPNIYQSMADKRQFTKALIICFVLSVTIYGGVAIMGFLMFGDGTLSQITLNMPQSAFASKVALWTTVINPFTKYPFCHKLAFL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2852 424 MobiDBLite consensus disorder prediction 12 49 - -
Ssu2g2852 424 MobiDBLite consensus disorder prediction 1 62 - -
Ssu2g2852 424 Gene3D Amino acid/polyamine transporter I 139 413 - -
Ssu2g2852 424 PANTHER OS05G0424000 PROTEIN-RELATED 31 420 - -
Ssu2g2852 424 PANTHER AMINO ACID TRANSPORTER AVT1A 31 420 - -
Ssu2g2852 424 Pfam Transmembrane amino acid transporter protein 139 417 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2852 Ssu-Chr2 89588623 89594016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2852 54 415 Amino Acid or Auxin Permease AAAP Family AT2G41190 66.486 9.93e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2852 K15015 - gmx:100816368 746.503