Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2836 ATGTTGGAGGTTAAAAAGGAGCTCAAGgatttcaattttgattcacCTCATCCAGATGGACTCCATTTATGTCTTTCTTCGCGTAATTGCAATAGCGATACCTTTCTTCTCGAATCAACCCCAATTGCAGGGAGAATAAAAGCACAAGCTAGACGCTGGACAGAGGAAGAGGACAATCTTTTGATTGAGAAGGTCAAGAAGCACAATGGAAGGAACTGGAAGAAAATAGCTGCATACCTCCCTGGGCGAACTGACGTCCAATGCTTGCATCGCTGGCAAAAGGTTTTAAATCCTGATCTTGTAAAGGGATCATGGACAAAGGAGGAAGATGATTGCCTCATTAAACTAGTCAGAAAGTATGGTATCAAGAGATGGTCTGTTATTGCAAAAAACTTACCAGGTCGTATTGGAAAGCAATGCCGAGAGAGGTGGCACAATCATCTTGATCCGGCTATTAAGAAGGATGCATGGACAGAGGAGGAGGAACTGTTTCTTGCTTACTATCACCAAATATACGGCAGTAAGTGGGCAGAAATTGCAAGGATTCTTCCCGGAAGGACTGACAATGCTATAAAAAATCATTGGAACTGTACTATGAAGAAGAAATTGGATGCATCACCATTTGGGTGTGACATCAATGCTGCCACTTCCAGCTTCTGCGCTTCTCGAATAAAGCCAGCACATGTTTTGGCTAAAGTCGAGAGTCAAAGTTTCAACGGAATGGTTTCTCTCAAGCAGAGTCACTGGTTGAAGCACAGTGTTGATAAGTTTCTAACAAAAATGATTCTTCAAAATACTTCTGGAGAGGAATCTTCCCCTGGAAAAAACTGTTTTGACTGGGAGACTCCTAAGGCCTCAAGACAAGGTGGTGAAAGCAGATTGGATAGTTTACCAAATGAGATGCACACTGTTACATATTGCAAAGACAACGCAGCCAACCTTACCTGCACAATTAAACGTATGGACTCGTTTATGGATAATTCTCTGGATATGCTCGCAACAAATTTGGATTGTTTACCTCTTGCCAGTACTGTTACATATGAGGCCTGTAAATATCCCAAACGACAAAAGGTTTCTTTTTCAGATGCAGAGTTTAATTTGGGTGACGAATCTGATCCCCTTTTGAGCTACTCAAAATCGGCTGACCGTGAGAAGAAAGGTCAAGCTGGAAGGGGAAGTAACAACAAAATCAACAGTATGCCACATAATGCAGATGGTAATGAATATGCTTACTTTCCCGTTGAACTGCCCCCGGTGGAAGATTTGGTACCCCCCACAGAATTCAGTGAATTTCTAAGTCCAAAAACACACATGGCAGGTGCAGACAATAGCGGTTGTACTCCCCCAACGTCTATACTCAAGAATTACACAGGCGACATCAGCCCAGAAACTGTGCTAAGAAGCTTAGCAATGACCTATGAGAATGTTCCTTCTATTATAAGGAAAAGGACACCCAGGAAGGCAAGCTATTGTGACAGTGACCAAGCACCTTCGAGAATGATCGTCTGTACTCCTGAAGCAGAACGTGTTATTGGCTTAGATAATTTAAAACTGAACCGGGGGTTTATTCCATTCCTTAGTAGACCAAACACTTCAGCCATAGCTAAATCTCTGGAAGGATGCATGGAATGA 1632 0.4216 MLEVKKELKDFNFDSPHPDGLHLCLSSRNCNSDTFLLESTPIAGRIKAQARRWTEEEDNLLIEKVKKHNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPDLVKGSWTKEEDDCLIKLVRKYGIKRWSVIAKNLPGRIGKQCRERWHNHLDPAIKKDAWTEEEELFLAYYHQIYGSKWAEIARILPGRTDNAIKNHWNCTMKKKLDASPFGCDINAATSSFCASRIKPAHVLAKVESQSFNGMVSLKQSHWLKHSVDKFLTKMILQNTSGEESSPGKNCFDWETPKASRQGGESRLDSLPNEMHTVTYCKDNAANLTCTIKRMDSFMDNSLDMLATNLDCLPLASTVTYEACKYPKRQKVSFSDAEFNLGDESDPLLSYSKSADREKKGQAGRGSNNKINSMPHNADGNEYAYFPVELPPVEDLVPPTEFSEFLSPKTHMAGADNSGCTPPTSILKNYTGDISPETVLRSLAMTYENVPSIIRKRTPRKASYCDSDQAPSRMIVCTPEAERVIGLDNLKLNRGFIPFLSRPNTSAIAKSLEGCME 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2836 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 96 IPR017930 -
Ssu2g2836 543 MobiDBLite consensus disorder prediction 371 400 - -
Ssu2g2836 543 Gene3D - 155 211 - -
Ssu2g2836 543 Gene3D - 49 101 - -
Ssu2g2836 543 Gene3D - 102 153 - -
Ssu2g2836 543 PANTHER MYB PROTEIN-RELATED 52 371 - -
Ssu2g2836 543 ProSiteProfiles Myb-like domain profile. 45 96 IPR001005 -
Ssu2g2836 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 152 IPR017930 -
Ssu2g2836 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 203 IPR017930 -
Ssu2g2836 543 SUPERFAMILY Homeodomain-like 50 110 IPR009057 -
Ssu2g2836 543 MobiDBLite consensus disorder prediction 268 295 - -
Ssu2g2836 543 CDD SANT 104 148 IPR001005 -
Ssu2g2836 543 SMART sant 101 150 IPR001005 -
Ssu2g2836 543 SMART sant 153 201 IPR001005 -
Ssu2g2836 543 SMART sant 49 98 IPR001005 -
Ssu2g2836 543 CDD SANT 52 96 IPR001005 -
Ssu2g2836 543 ProSiteProfiles Myb-like domain profile. 97 148 IPR001005 -
Ssu2g2836 543 SUPERFAMILY Homeodomain-like 99 195 IPR009057 -
Ssu2g2836 543 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Ssu2g2836 543 Pfam Myb-like DNA-binding domain 102 148 IPR001005 -
Ssu2g2836 543 Pfam Myb-like DNA-binding domain 154 196 IPR001005 -
Ssu2g2836 543 Pfam Myb-like DNA-binding domain 52 96 IPR001005 -
Ssu2g2836 543 MobiDBLite consensus disorder prediction 376 390 - -
Ssu2g2836 543 PANTHER TRANSCRIPTION REPRESSOR MYB5 52 371 - -
Ssu2g2836 543 CDD SANT 156 196 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2836 Ssu-Chr2 89419147 89423890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2836 53 204 MYB Transcription Factor Family AT5G02320 69.737 1.15e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g2836 Myb_DNA-binding 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2836 - - aprc:113869477 800.431