Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2835 ATGGCGCCATTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTCGCAGAGATCCATTCCGACGCCGTTTCTGACGAAGACATACCAGCTCGTGGATGATCCCTCCGCTGATGACCTAATTTCCTGGAACGAAGATGGCACGAGCTTCATCGTTTGGCGACCCGCGGAATTCGCACGGGATTTGCTTCCAAAGTACTTCAAACACAACAACTTTTCCAGCTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGATTGTTTCCGGCGAGGTGAGAGAGGTCTTCTTCGCGACATACAGCGCCGGAAAATATTGCCGGCACCGGCGGCAGGGGTACCAGCAGCAGCGGCTGTCACGGTCCATACGGTGACGGTGGCGGTGGCGGCACCGGCGGTCAGAACGGTGTCCCCGACGACTTCCGGCGATGAACCGGTACTATCCTCGAACTCATCCCCGATTGCTGCGCATAATAGTAATACAGTGCACCGCACCACGAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCAAGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATACTCGCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCATCCACTAGTGCTGTAAGGACCGTGCCTGTGCCGGAAGCGAAGGCGCTGGAGCTTTTGCCTGCGAAGCATGTTTCGTCGGCCGAGGACGCCGTGCATGGTGGTGGCGCTGCCGGCGCCGCGCCGTGTGCGACGGCGAATGCGGCCGAAGCAGAGGTCCCCAAGCTGTTTGGGGTCTCGATTGGGCTGAAACGGTGTAGGACAGAGGGCGAGGCCGAACCGGAGGGAGAAGAACAGAATCAAACGCAAACGCGAGCACAAACGCAAACACAGTCGTCGCAAGAACCAGATCGCGGGTCAGATGTGAAATCTGAGCCGCTTGATGGTAATGACTCGGATGATCAGGATGCGCGTTGGCTGGAGCTTGGGAAATAA 1065 0.5577 MAPLPAEQTGESAPTESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKILPAPAAGVPAAAAVTVHTVTVAVAAPAVRTVSPTTSGDEPVLSSNSSPIAAHNSNTVHRTTSCTTAPELLEENERLRKENMQLSQELSQLKGLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEAKALELLPAKHVSSAEDAVHGGGAAGAAPCATANAAEAEVPKLFGVSIGLKRCRTEGEAEPEGEEQNQTQTRAQTQTQSSQEPDRGSDVKSEPLDGNDSDDQDARWLELGK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2835 354 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 MobiDBLite consensus disorder prediction 298 354 - -
Ssu2g2835 354 Coils Coil 182 209 - -
Ssu2g2835 354 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Ssu2g2835 354 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 Gene3D - 17 115 IPR036388 -
Ssu2g2835 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 340 IPR027725 -
Ssu2g2835 354 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g2835 354 MobiDBLite consensus disorder prediction 307 327 - -
Ssu2g2835 354 MobiDBLite consensus disorder prediction 148 178 - -
Ssu2g2835 354 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g2835 354 MobiDBLite consensus disorder prediction 328 354 - -
Ssu2g2835 354 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 8 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2835 Ssu-Chr2 89413916 89415075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2835 16 354 HSF AT4G11660 52.874 5.07e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu2g2835 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2835 K09419 - gmx:100791020 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2835 2 89413916 89415075 Ssu2g2835 2 89413916 89415075 ECH