Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2833 ATGGCGACGACAAGGTCCCCGAGCCGTTCCTCCGAGGATATCGTCGATTCGACGCCGCTGCTGGCGAATTCAGGCGGCTCCTCCGACGACCTCGCCTCCGGGCGTCGATTCGCGCGGCGACAGCGGCTCCGCCAGGCGGCGCGGTTCCTCCGGCAGGCCAGCGGGCGGCGGATAATGCGCGAGCCGTCGATGGTGGTCCGGGAGGCGGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGGTTCTGGACATCGTTTGGAACTTCGCGTTCGTTGTGGTGGCGGGGACGGTGTTGGTTTTGAGCGCGGGCGAAGCGCCGGGGATGCCTCTGAGGCTGTGGATTGTAGGGTACGCTATGCAATGCGTGCTTCACATGGTTTGCGTTTGCGTGGAGTATAGGAGGCGGAGGAGGCAGCAACGCTCGTTGAACTCAGTCTCAGTGCAGGACAGGGTTGGGAGCAGCGGTGGGAATTTGAGTGCCTCGTCGAGGGAGGGTTCTGCTTCTGGGTCTGCGCATTATGTCTCGTTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATAcaatgttttcatttatttggtGGATTATCGGATTCTACTGGGTATCTGCTGGTGGTCAAGCATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTAGGTTTTGATGTTTTCTTTGTGGTTTTCTGTGTTGCACTGGCATGTATCATTGGTATTGCTGTTTGCTGCTGCCTTCCGTGTATCATTGCACTTCTTTATGCAGTTGCGGACCAGGAAGGGGCATCGAAGGAAGACATTGAGCAgttgtcaaaatttaaattccgAAGAATCGAAAACAATGAAAAACTTACAGGTACTATACAAGGACCTGTTGGAGGAATAATGACTGAATGCCAGGCTGATTCGCCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAGGTGTAG 1170 0.5171 MATTRSPSRSSEDIVDSTPLLANSGGSSDDLASGRRFARRQRLRQAARFLRQASGRRIMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGTVLVLSAGEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRSLNSVSVQDRVGSSGGNLSASSREGSASGSAHYVSLGQLDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIENNEKLTGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLSQEEV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2833 389 CDD RING-H2_RNF111_like 333 377 - -
Ssu2g2833 389 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 389 - -
Ssu2g2833 389 MobiDBLite consensus disorder prediction 1 30 - -
Ssu2g2833 389 SMART ring_2 334 374 IPR001841 -
Ssu2g2833 389 MobiDBLite consensus disorder prediction 151 174 - -
Ssu2g2833 389 Pfam Ring finger domain 333 375 IPR001841 -
Ssu2g2833 389 SUPERFAMILY RING/U-box 324 381 - -
Ssu2g2833 389 MobiDBLite consensus disorder prediction 1 33 - -
Ssu2g2833 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Ssu2g2833 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 388 IPR013083 -
Ssu2g2833 389 PANTHER TARGET OF ERK KINASE MPK-1 5 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2833 Ssu-Chr2 89380612 89386296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2833 1 382 C3H Transcription Factor Family AT1G68070 48.571 7.32e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2833 - - gmx:100790497 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1509 6 24759212 24763519 Ssu2g2833 2 89380612 89386296 PCT