Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2832 ATGGGTAAGGCATCGAAATGGTTTCGCGGCCTTCTCGGTCTGAAAAGACCAGACTCGCCGTCTGCTACCGCTCCAAAACCACCCAAGGAGAAACGCCGGTGGAGCTTCGTCAAGTCTTACAGAGAAAAGGACAACACCACCGTGGAGCACCACGCACCACCGACCTATGGAGACCGCTCCTCGGGACACGTGGAAGGCGCCGAGCCCGATATCGCAGCCGCCACCGCTGCCGTCGCTGCTGCTCATGCGGCCGCCGCCGTGGCTTTTCTCGCTTGTAGTGGCCGGTGCGCTGCCACCACCGCCGGAGACGTTATTCGAGAAGAATGGGCAGCCATTAAGATTCAAGCCGCGTTTCGCGGCTCTTTGGCTAGGAAAGCCCTTCGAGCGTTAAAAGGATTGGTAAAACTTCAGGCATTAGTGAGAGGTCACATTGAGAGGAAGCGCACAGCAGAGTGGCTGCAAAGAGTGCAAGCACTCTTACGTGTACAGGCCCAAGTCCATGCTGGGCGGGCCCAAATTTTGCACTCACCGTATAGGAATGCAAAGTCATCCACTGCCCCCCTCCATGTTCCAGCAACACCAGACAAATTTGAAAGCCCCATCAGATCCGAGAGTATGAAATATGATCAGTTATCATCAGTACTCAAGAGAAACAGCTCCAAATCCCGCTTACAGATCTATGACAATCAAGAGAGATGTGGGAATAGATCAGATAGTCGCATTGATGAACAACCATGGAATCAACGAAGATCATGGACAAGAACCTGTAGCATGGATGAAGAAAGAAGTCTCAGGATTCTTGAAATTGATTCTGTAAAGCCTCACATCACATCAAAACGTAGAAACCTCTCGTACTCCCCTAGCCAAGCTTTGGTTTCGGATCATTACGGTCTGAGTTTGACAACCACAATGGACTCAGTATCTTATCAATCGGGTCAAAGTCCATCTTCTTATGAAGTTCAGTCTTGCGGCCCTCTAAAAATCAATAAGATTGAGGAGAGCTCATTCTGCGCTGCTGACAATAGTCCTCAAACTTTATCTGCCTCGTCTAAAGATGGTGGCTCCAAAAGAGGCCCTTTTACTCCTACCAAGAGTGATGGCTCAAGAAGCTATCTAAGTGGTTATTCTGAATCTGACTATCCAAGTTACATGGCTTACACCGAGTCTTCAATGGCAAAGGTAAGATCTCTCAGTGCTCCAAAGCAGAGGCCCCAGTATGAGAGGTCTAGTTCATCTAACAGGTACTCGCTTCATGGATTTGGTGAGTCAAAATTGGCCGCACAAAGGGCATCTGCATTACACGCAAGCTTCACTAGCAAAGCTTACCCTGGTTCTGGTCGTATGGACAAGCTTGGTTTGCCTGTGGGGTATAGATACTGA 1380 0.4942 MGKASKWFRGLLGLKRPDSPSATAPKPPKEKRRWSFVKSYREKDNTTVEHHAPPTYGDRSSGHVEGAEPDIAAATAAVAAAHAAAAVAFLACSGRCAATTAGDVIREEWAAIKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLQRVQALLRVQAQVHAGRAQILHSPYRNAKSSTAPLHVPATPDKFESPIRSESMKYDQLSSVLKRNSSKSRLQIYDNQERCGNRSDSRIDEQPWNQRRSWTRTCSMDEERSLRILEIDSVKPHITSKRRNLSYSPSQALVSDHYGLSLTTTMDSVSYQSGQSPSSYEVQSCGPLKINKIEESSFCAADNSPQTLSASSKDGGSKRGPFTPTKSDGSRSYLSGYSESDYPSYMAYTESSMAKVRSLSAPKQRPQYERSSSSNRYSLHGFGESKLAAQRASALHASFTSKAYPGSGRMDKLGLPVGYRY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2832 459 MobiDBLite consensus disorder prediction 25 49 - -
Ssu2g2832 459 Pfam IQ calmodulin-binding motif 134 148 IPR000048 GO:0005515
Ssu2g2832 459 Pfam IQ calmodulin-binding motif 109 128 IPR000048 GO:0005515
Ssu2g2832 459 PANTHER IQ-DOMAIN 5-RELATED 1 454 - -
Ssu2g2832 459 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 454 - -
Ssu2g2832 459 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Ssu2g2832 459 SMART iq_5 129 150 IPR000048 GO:0005515
Ssu2g2832 459 SMART iq_5 106 128 IPR000048 GO:0005515
Ssu2g2832 459 MobiDBLite consensus disorder prediction 341 372 - -
Ssu2g2832 459 Gene3D - 106 159 - -
Ssu2g2832 459 MobiDBLite consensus disorder prediction 1 64 - -
Ssu2g2832 459 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Ssu2g2832 459 Pfam Protein of unknown function (DUF4005) 342 418 IPR025064 -
Ssu2g2832 459 MobiDBLite consensus disorder prediction 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2832 Ssu-Chr2 89371727 89375200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2832 108 459 IQD Protein Family AT4G23060 44.293 1.69e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2832 - - gmx:100814244 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2832 2 89371727 89375200 Ssu2g2832 2 89371727 89375200 ECH
Ssu6g1511 6 24784677 24789000 Ssu2g2832 2 89371727 89375200 PCT