LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2830	ATGCATGGGCCCGCCGTTCACGTACTTAGAGTTCCCTCCGGCGAGATCATATACTGGAATCACTCAGCAGAAACTCTGTATGGATGGAAGGACTACGAAATCATTGGCCAAAGAGTAGCTAAAGTCCTAATTGCAGAAGAAAATTATGCATCTCTACAAAAAATTCTGGAAAGGTTGGTCACAGGAGTACCTTGGTCAGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTGTCAAGTGAAGCAGCTATATTAAACTCTAGAAATTCAGAAAATCAAAGAACTTACCAATCTGGTAAAAATGGCCAACCTGCAGTACAGAGGTTAAACTTCAAAAGGATTCATTGGCCTCCACGACCAATGATTGCACCAATGCCACAGATTGCTTCATGTGTTTCCAATCTGGTTCCCATTAGTGTCATTACTACTGTTctttacaatttcttttttcttttttgcttttttttatttgggtttcattttattatttgcttaaattaa	567	0.3651	MHGPAVHVLRVPSGEIIYWNHSAETLYGWKDYEIIGQRVAKVLIAEENYASLQKILERLVTGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVITVSSEAAILNSRNSENQRTYQSGKNGQPAVQRLNFKRIHWPPRPMIAPMPQIASCVSNLVPISVITTVLYNFFFLFCFFLFGFHFIICLN	188

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g2830	188	SUPERFAMILY	PYP-like sensor domain (PAS domain)	12	100	IPR035965	-
	Ssu2g2830	188	TIGRFAM	sensory_box: PAS domain S-box protein	12	100	IPR000014	-
	Ssu2g2830	188	CDD	PAS	14	100	IPR000014	-
	Ssu2g2830	188	ProSiteProfiles	PAS repeat profile.	13	63	IPR000014	-
	Ssu2g2830	188	Gene3D	PAS domain	7	106	-	-
	Ssu2g2830	188	PANTHER	SERINE-THREONINE PROTEIN KINASE	3	158	-	-
	Ssu2g2830	188	Pfam	PAS domain	11	100	IPR000014	-
	Ssu2g2830	188	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED	3	158	-	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2830	Ssu-Chr2	89341057	89342757	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2830	3	150	MAP Kinase Kinase Kinase	AT4G23050	45.333	1.29e-36	132

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2830	-		-	gmx:100813707	284.263

Showing 1 to 1 of 1 entries