Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2830 ATGCATGGGCCCGCCGTTCACGTACTTAGAGTTCCCTCCGGCGAGATCATATACTGGAATCACTCAGCAGAAACTCTGTATGGATGGAAGGACTACGAAATCATTGGCCAAAGAGTAGCTAAAGTCCTAATTGCAGAAGAAAATTATGCATCTCTACAAAAAATTCTGGAAAGGTTGGTCACAGGAGTACCTTGGTCAGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTGTCAAGTGAAGCAGCTATATTAAACTCTAGAAATTCAGAAAATCAAAGAACTTACCAATCTGGTAAAAATGGCCAACCTGCAGTACAGAGGTTAAACTTCAAAAGGATTCATTGGCCTCCACGACCAATGATTGCACCAATGCCACAGATTGCTTCATGTGTTTCCAATCTGGTTCCCATTAGTGTCATTACTACTGTTctttacaatttcttttttcttttttgcttttttttatttgggtttcattttattatttgcttaaattaa 567 0.3651 MHGPAVHVLRVPSGEIIYWNHSAETLYGWKDYEIIGQRVAKVLIAEENYASLQKILERLVTGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVITVSSEAAILNSRNSENQRTYQSGKNGQPAVQRLNFKRIHWPPRPMIAPMPQIASCVSNLVPISVITTVLYNFFFLFCFFLFGFHFIICLN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2830 188 SUPERFAMILY PYP-like sensor domain (PAS domain) 12 100 IPR035965 -
Ssu2g2830 188 TIGRFAM sensory_box: PAS domain S-box protein 12 100 IPR000014 -
Ssu2g2830 188 CDD PAS 14 100 IPR000014 -
Ssu2g2830 188 ProSiteProfiles PAS repeat profile. 13 63 IPR000014 -
Ssu2g2830 188 Gene3D PAS domain 7 106 - -
Ssu2g2830 188 PANTHER SERINE-THREONINE PROTEIN KINASE 3 158 - -
Ssu2g2830 188 Pfam PAS domain 11 100 IPR000014 -
Ssu2g2830 188 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 3 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2830 Ssu-Chr2 89341057 89342757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2830 3 150 MAP Kinase Kinase Kinase AT4G23050 45.333 1.29e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2830 - - gmx:100813707 284.263