Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2827 atgtggccCCTATGTCTTGGAGCATTGATTATTATAGGCATAACACATTGGGTTTATAGATGGAGAAATCCTAGTTGCAAAGGAAATCTCCCACCAGGTTCAATGGGTTTGCCCCTTCTGGGTGAGACCCTTCAGTTTTTCTCCCCTAACGCTTCTTCTGATATTCCTCCTTTCATCAAGCAGAGAATGAAAAGGTATGGACCAATCTTCAAGACCAACTTGGTTGGACGACCAGTTGTAATATCAACAGACCCTGATCTTAATTACTTCATCTTCCAACAAGAGGGGCAAGTGTTCCAAAGCTGGTACCCAGAAACATTCACAGAGATCTTTGGGCGACAAAATGTAGGCTCCTTACATGGGTTTATGTACAAGTACCTTAAGAACATGGTGCTCAATCTGTTTGGTCCTGAAAGCCTTAAGAAGATGCTCTCAGAAGTTGAACAAACAGCGTGCAGAACATTACAGCAGTGGTCATGTGAGGACAGTGTTGAATTGAAGGAAGCAACAGCAAGGATGATATTTGATTTGACCGCGAAAAAGCTCATCAGTTATGATTCGACCAAGTCCTCGGAGAATTTAAGGGACAACTTTGTTGCATTTATACAAGGACTCATCTCATTCCCTCTGGACGTTCCAGGAACAGCTTATCACAAATGTCTGCAGGGTAGGAAAAGGGCAATGAAGATGCTTAAGAACATGCTGCAGGAAAGACGGAGAATGCATAGGAAACAGCGAACAGATTTCTTTGACTATGTTATTGAAGAACTTCAGAAAGAGGGAACAATCCTCACTGAAGCGATCGCTCTGGACCTCATGTTTGTGCTCCTCTTTGCAAGCTTTGAAACCACTTCTCTCGCTCTGACTTATGCCATAAAATTACTCTCGGACCATCCCTTAGTGCTCAAGCAATTACAAGAAGAACATGAAGCCATCCTCAAACGACGTAAAGATCCTAACTTCGGAGTCACGTGGAAAGAATACAAATCAATGACATTTACATTTCAGTTCATAAATGAAACCGTGAGACTTGCAAATATAGTTCCAGGAATCTTCCGGAAGGCACTgaaggaaattaattttaaggGATATACCATACCGGCAGGTTGGGCAGTTATGGTGTGTCCCCCGGCTGTACACTTGAATCCAGCGAAATATCAGGATCCCCTTGCTTTCAACCCAAGGAGATGGGAGGGAGTGGAACTAAATGGTGCCAGCAAACATTTCATGGCTTTCGGCGGAGGCATGAGATTTTGTGTTGGAACAGACTTCACTAAGGTTCAGATGGCTATTTTTCTCCATAGCTTGGTAACGAAATGCCGGTGGCGACCCATCAAAGGAGGAAATATCGTTCGAACTCCTGGTTTACAATTTCCAAATGGCTTTCACGTCCAGGTCATGGAGAAAGATCAAAGCAAGCAGGAACCagaatatattaatacaaattag 1449 0.4224 MWPLCLGALIIIGITHWVYRWRNPSCKGNLPPGSMGLPLLGETLQFFSPNASSDIPPFIKQRMKRYGPIFKTNLVGRPVVISTDPDLNYFIFQQEGQVFQSWYPETFTEIFGRQNVGSLHGFMYKYLKNMVLNLFGPESLKKMLSEVEQTACRTLQQWSCEDSVELKEATARMIFDLTAKKLISYDSTKSSENLRDNFVAFIQGLISFPLDVPGTAYHKCLQGRKRAMKMLKNMLQERRRMHRKQRTDFFDYVIEELQKEGTILTEAIALDLMFVLLFASFETTSLALTYAIKLLSDHPLVLKQLQEEHEAILKRRKDPNFGVTWKEYKSMTFTFQFINETVRLANIVPGIFRKALKEINFKGYTIPAGWAVMVCPPAVHLNPAKYQDPLAFNPRRWEGVELNGASKHFMAFGGGMRFCVGTDFTKVQMAIFLHSLVTKCRWRPIKGGNIVRTPGLQFPNGFHVQVMEKDQSKQEPEYINTN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2827 482 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Ssu2g2827 482 Pfam Cytochrome P450 31 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PANTHER CYTOCHROME P450 26 8 466 - -
Ssu2g2827 482 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 SUPERFAMILY Cytochrome P450 27 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu2g2827 482 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 8 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2827 Ssu-Chr2 89312884 89315823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2827 1 469 Cytochrome P450 AT1G12740 75.630 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2827 - - gmx:100812089 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2827 2 89312884 89315823 Ssu2g2827 2 89312884 89315823 ECH