Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2821 ATGGCGTCCTCACCATCTTCCAAGAGGCACCCACTGTACCACGGCATCCGGTGCCGCGGAAGGAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGGCGTCCCGCATATGGCTGGGCACGTTCCCGACACCGGAGATGGCCGCCGCCGCCTATGACGTGGCGGCGCTGGCCTTGAAAGGTGACGGCGCCGTTCTGAACCTCCCTCACTCGGTAGCCAAGTACCAAATCCCTGCGACCAACTCTCCTGCGGATATCCGCAGTGCTGCCTCTGCTGCGGCCGCAATGATAAAGGCTGAAACTGAAACTGAAACTGAACCTACCCACGATGCACCAATGGCTGAAGCTACCCACAATGCATCAACTTCGTGGTTTGAAACTGATTTCATAGACGAGGAAGCCATATTCTGCATGCCGAGTTTGCTCGTGGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGAGCCCGCAGCCGTCCGATAACTCACCTGAGAAGCAAGGTGGAGAAACTTTGTGGagttatttttga 531 0.5669 MASSPSSKRHPLYHGIRCRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHSVAKYQIPATNSPADIRSAASAAAAMIKAETETETEPTHDAPMAEATHNASTSWFETDFIDEEAIFCMPSLLVDMAGGMLLSPPRMSPQPSDNSPEKQGGETLWSYF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2821 176 MobiDBLite consensus disorder prediction 151 176 - -
Ssu2g2821 176 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Ssu2g2821 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 176 - -
Ssu2g2821 176 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Ssu2g2821 176 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Ssu2g2821 176 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Ssu2g2821 176 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Ssu2g2821 176 PANTHER ETHYLENE RESPONSE FACTOR 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2821 Ssu-Chr2 89230494 89231024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2821 7 175 AP2-EREBP Transcription Factor Family AT5G52020 54.023 2.82e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu2g2821 AP2 6.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2821 - - gmx:100811020 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1520 6 24959060 24959602 Ssu2g2821 2 89230494 89231024 PCT