Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2820 ATGTCCGTGAACCGTGTCCGCATACTTGCCTCGTACGTGGCCCAACCTGGCCTCAAAAAGCTATATATATGCCCCGCACACTCACTTCCTCAACTAACACCGCATCCCTATTCCCTCACTATTCAACACTCCAACACAACATTCAACACAACCACCGAACCGAGCCGAACCGCGCCAACTTCTCGGATGAACATTTTCAAATCACCACTTGACCATGAGTTGAACTGTGGAACCCACGAGTCAGAAGCATCCTATTCATCGGAAACGAGTTCAATTCGGAGCGCCTACTCAGACGAAGAAGTGATACTAGCGTCGGCGCGACCAAAGAAGCGAGCGGGGCGAAGAGTGTTCAAGGAGACGCGGCACCCCGTGTACCGAGGAGTGCGGCGCAGGAACAAGAACAAGTGGGTCTGCGAGATGCGAGTCCCCAACAACAACTCGCGTATTTGGCTCGGGACATACGCAACGCCCGAAATGGCCGCGCGGGCACACGACGTTGCCGCGCTGGCGCTTCGGGGAAAGTCCGCCTGCCTCAATTTCGCCGACTCCGTGTGGCGGCTGACGGTGCCGGCGACCACCGACGCCAAGGAGATAAGGCGAGCGGCGGTGGAGGCTGCCGAGTCGTTTGCCGCTGAGGACATTAACGTCAATCAACAGCAGAGTGCGATGGCCACAAATGAAGCTCAAGAGCCTCTGCAGCAGCAAGAGGGGATGTATGTGGATGAAGTCGAAGACTTGCATGATTTGCTTTTGAGTATCGCGGATGAGCCGTTGATGTCACCTCCTCCTTCTGCGAGAGATTGTATGGACTGGGCTGACGTGGAGATATTTGATGCTGAAGTGTCATTATGGAACTTTTCAATTTGA 867 0.5467 MSVNRVRILASYVAQPGLKKLYICPAHSLPQLTPHPYSLTIQHSNTTFNTTTEPSRTAPTSRMNIFKSPLDHELNCGTHESEASYSSETSSIRSAYSDEEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYATPEMAARAHDVAALALRGKSACLNFADSVWRLTVPATTDAKEIRRAAVEAAESFAAEDINVNQQQSAMATNEAQEPLQQQEGMYVDEVEDLHDLLLSIADEPLMSPPPSARDCMDWADVEIFDAEVSLWNFSI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2820 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 63 288 IPR045277 GO:0003700
Ssu2g2820 288 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Ssu2g2820 288 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 63 288 - -
Ssu2g2820 288 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 CDD AP2 125 183 IPR001471 GO:0003700|GO:0006355
Ssu2g2820 288 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2820 Ssu-Chr2 89203610 89204476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2820 97 286 AP2-EREBP Transcription Factor Family AT1G12610 47.596 2.46e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g2820 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2820 - - gmx:100789097 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2820 2 89203610 89204476 Ssu2g2820 2 89203610 89204476 ECH
Ssu7g0739 7 14846963 14847598 Ssu2g2820 2 89203610 89204476 ECH
Ssu6g1521 6 25015636 25016328 Ssu2g2820 2 89203610 89204476 PCT