Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2810 ATGCAAGAACCAAGCCTGGGAATGATGGGTGGTTTAAGCGGCGAGGTGTCCGGCGATCACCACCGCCAACTCAAGGCGGAGATAGCCACTCATCCGCTGTACGAGCAGCTTCTGGCTGCCCACGTGGCATGTCTCCGAGTAGCCACTCCCATCGATCAGCTTCCACTCATCGATGCTCAGTTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCTCGCACCACACCCACTCTCTCTCCCCCCATGACCGCCAAGAACTTGACAACTTTCTGGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAACACCTTACAAGCTCTCACAGgAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGATGATTTACAGATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTGAGGAAGCGTAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGTTAAAGAACTGGTGGCAGCAGCATGCAAAGTGGCCTTACCCCACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAGCGCAAGAGAGTGTAG 861 0.4797 MQEPSLGMMGGLSGEVSGDHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHHTHSLSPHDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2810 286 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Ssu2g2810 286 Pfam KNOX2 domain 80 131 IPR005541 GO:0003677|GO:0005634
Ssu2g2810 286 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Ssu2g2810 286 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Ssu2g2810 286 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Ssu2g2810 286 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Ssu2g2810 286 Gene3D - 207 281 - -
Ssu2g2810 286 CDD homeodomain 211 272 IPR001356 GO:0003677
Ssu2g2810 286 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Ssu2g2810 286 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 285 - -
Ssu2g2810 286 SMART HOX_1 210 275 IPR001356 GO:0003677
Ssu2g2810 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 285 - -
Ssu2g2810 286 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2810 Ssu-Chr2 89039506 89045735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2810 1 284 Homeobox Transcription Factor Family AT1G62990 80.479 3.70e-174 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu2g2810 KNOX2 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2810 - - gmx:100808872 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2810 2 89039506 89045735 Ssu2g2810 2 89039506 89045735 ECH
Ssu6g1534 6 25178018 25185997 Ssu2g2810 2 89039506 89045735 PCT