Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2806 ATGGCCTCAATTCTTCAAGCTTCTACCTTATTGCTTGCTTTTACAATGATGTTCACGTTCATGGGAGACCGCGCAGTAGCTGGGGGAATATTTCGACCCAGTCAATGGGCTCTTGCCCATGCTACCTTTTACGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGTTACGGGAATTTGTTTCAAAATGGTTACGGGACAGACACGGCGGCTTTAAGCTCCACATTGTTCAACAATGGTTACGCATGTGGAACTTGTTACCAGATAAAATGCTACCAATCCAGTGCATGTTACAAAAATGTGCCCTTCATCACAGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCCCAACCTTCCAATAGTGGGGGCTGGTGCAACCCACCACGAGTGCATTTTGATATGTCCAAGCCCGCCTTCATGAAAATTGCGCAGTGGAAGGCTGGCATCGTCCCAGTTATGTACCGCagAGTGCCATGCGTAAGGAGGGGAGGGCTTCGATTCTCTTTCCAGGGAAATGGGTACTGGCTATTGGTATACGTGATGAACGTGGGAGGTGGAGGAGATATTTCTAGCATGTCAGTGAAAGGGAGCAGAAGTGGATGGATTAGCATGAGCCACAACTGGGGGGCTTCCTATCAAGCTTTTGCAACTCTGGGTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAGGGAGACTATTATTGCATGGAATGTTGCTCCTTCCAATTGGAACGTCGGACTAACTTATTCCACCGCCGTTAACTTCCGCTAG 789 0.4854 MASILQASTLLLAFTMMFTFMGDRAVAGGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVPFITVTATNLCPPNWSQPSNSGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRRGGLRFSFQGNGYWLLVYVMNVGGGGDISSMSVKGSRSGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTAVNFR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2806 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Ssu2g2806 262 PANTHER EXPANSIN 2 261 - -
Ssu2g2806 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Ssu2g2806 262 Gene3D - 26 162 IPR036908 -
Ssu2g2806 262 Gene3D - 168 262 IPR036749 -
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Ssu2g2806 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Ssu2g2806 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Ssu2g2806 262 Coils Coil 261 262 - -
Ssu2g2806 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Ssu2g2806 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Ssu2g2806 262 SMART dpbb_1 71 157 IPR007112 -
Ssu2g2806 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Ssu2g2806 262 PANTHER EXPANSIN-A15 2 261 IPR002963 GO:0009664
Ssu2g2806 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Ssu2g2806 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2806 Ssu-Chr2 88957984 88959209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2806 1 262 Expansin Gene Family AT1G12560 65.399 2.89e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2806 - - gmx:100807807 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2806 2 88957984 88959209 Ssu2g2806 2 88957984 88959209 ECH
Ssu6g1538 6 25281719 25282925 Ssu2g2806 2 88957984 88959209 PCT