Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2796 ATGAGAAGACACCGTGAAATTCATCTCTCTCATGCTCTATTGTGCgctgttttttgttttctcgtGACAGTTTCCGCGGCATCTGAGAAGGAAATTTTGCTTGAATTCAAGGGTAACATCACGGACGATCCGCGCGACAGTCTGAGTTCGTGGGTTTCAAGTGGAAACCCGTGCCATGATTACAAGGGTGTTTCTTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTTCTTTGGAACACTAGCTTGGGTGGGGTGTTGTCCTCGTCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACGTTGTTCGGGAACCGTTTCTCGGGTGGTATTCCCGAAGGGTATGGTGATCTTCACTCGTTGTGGAAGATCAATTTGAGCTCCAATGCTTTATCCGGTTCGATCCCCGACTTCATTGGTGATTTGGGTAGCATTCGGTTTCTAGATTTATCCAAGAATGGATTCAATGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAGCCTTGCTGGTTCAATTCCTGCCTCCTTGGTGAATTGCTCCAACCTTGAAGGGTTTGATTTTTCCTTCAACAACCTCAGTGGGGTTGTCCCTTCGCGGCTTTGTGACATTCCAAGGCTGTCATATGTGTCGCTGAGAAGCAATGCCTTGTCCGGGAGCGTGCAGGAGCTCGTTTCCTCATGCCAAAGTCTCGAACATTTGGATTTTGGTAGTAATAGGTTCACTGATTTGGCTCCATTCAGGGTCCTTGGAATGCAAAACCTTACTTATCTCAATATATCGGATAATGGGTTTGGAGGACAAATTCCTGAAATCGGTGCCTGCAGTGGGAGATTGGAATTCTTTGATGCTTCAGGGAATTCTTTGGATGGGGAGATTCCCTCCAGCATAACTAAATGCAAGAGCCTAAAGCTCTTGGCGTTGGAGTTGAATAGGCTGGAGGGGAATATCCCAGTGGATATTCCGGAATTGCGGGGACTAATAGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATTCCCAAGGGCTTTGGCAACATTGAGCTGCTTGAATTGCTGGATTTGCACAATCTAAACCTCACTGGCGAAATTCCTGATGATATAGGCAATTGCCAGTTTCTTCTTGGGCTGGATGTTTCTGGTAATAACTTAGAAGGTGAGATTCCTCAGACCCTTTACAACATGACAAACCTGGAATCCCTTAACCTACATCATAACCAGCTAAATGGAAGCATTCCCCCAAGCCTAGGAAACCTGTCAAAGATCCAATACCTAGATCTGTCACATAATTCACTTTCTGGTTCAATCCCTTCATCCCTtggaaatttaaataacttgaCATATTTTGATCTCTCATTCAATAATCTCTCTGGTAAAATTCCTTATGTTGGAACCATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCGTTTTCTCTGCGGTGATCCTTTGGACACCCCTTGCTCGGTGAACGGAACTATATCGCCTTCAGCTCCTGGGAAGCCTAAAGTTCTGAGCACCTCAGCAATTGTTGCAATTGTTGCTGCAGCTGTAATTCTTACTGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCACGGGGTAGAAAAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGTAAAAGTTTGCCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCCATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGCATCTCAATTGCAGTGAAGAAGCTTGAGACCTTGGGAAGGATCAGAAACCAGGAGGAATTTGAGCATGAAATTGGGCGACTAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTACTATTGGTCCTCGTCAATGCAGTTGATTCTATCGGAGTTTGTCCCAAATGGGAATCTGTATGATAATCTACATGGGTTTGGCTATCCTGGAACCAGCACTAGTAGAGGCAATAGGGAATTGTATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTTCTTATCTCCACCATGACTGTAGGCCCCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTCTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGCCTGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTTTTGTGTGAATATGTAAAAGGCTTGTTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAACTTTACTGGGCTTTGCTGAGAATGAATTAATTCAGGTTATGAGATTGGGGCTAATTTGTACCTCCGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTTCAGGTCCTTGAGTCCATTAGAAATGGATTGGAATCCCATTAA 2658 0.4327 MRRHREIHLSHALLCAVFCFLVTVSAASEKEILLEFKGNITDDPRDSLSSWVSSGNPCHDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGGIPEGYGDLHSLWKINLSSNALSGSIPDFIGDLGSIRFLDLSKNGFNGEIPSALFRYCYKTKFVSLSHNSLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSRLCDIPRLSYVSLRSNALSGSVQELVSSCQSLEHLDFGSNRFTDLAPFRVLGMQNLTYLNISDNGFGGQIPEIGACSGRLEFFDASGNSLDGEIPSSITKCKSLKLLALELNRLEGNIPVDIPELRGLIVIKLGNNSIGGMIPKGFGNIELLELLDLHNLNLTGEIPDDIGNCQFLLGLDVSGNNLEGEIPQTLYNMTNLESLNLHHNQLNGSIPPSLGNLSKIQYLDLSHNSLSGSIPSSLGNLNNLTYFDLSFNNLSGKIPYVGTIQRFGASAFSNNRFLCGDPLDTPCSVNGTISPSAPGKPKVLSTSAIVAIVAAAVILTGVCLVTIMNMRARGRKKDDDQIMIVESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRGNRELYWSRRFQIALGTARALSYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVKGLLETGSASNCFDRTLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2796 885 SUPERFAMILY L domain-like 73 160 - -
Ssu2g2796 885 Gene3D Ribonuclease Inhibitor 25 166 IPR032675 -
Ssu2g2796 885 Gene3D Ribonuclease Inhibitor 167 506 IPR032675 -
Ssu2g2796 885 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Ssu2g2796 885 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Ssu2g2796 885 PANTHER - 24 884 - -
Ssu2g2796 885 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Ssu2g2796 885 SMART LRR_typ_2 430 454 IPR003591 -
Ssu2g2796 885 SMART LRR_typ_2 141 165 IPR003591 -
Ssu2g2796 885 SMART LRR_typ_2 406 429 IPR003591 -
Ssu2g2796 885 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Ssu2g2796 885 Gene3D Phosphorylase Kinase; domain 1 567 673 - -
Ssu2g2796 885 SUPERFAMILY L domain-like 164 492 - -
Ssu2g2796 885 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Ssu2g2796 885 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Ssu2g2796 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2796 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2796 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Ssu2g2796 885 Gene3D Transferase(Phosphotransferase) domain 1 674 884 - -
Ssu2g2796 885 CDD STKc_IRAK 603 878 - -
Ssu2g2796 885 PANTHER UNNAMED PRODUCT 24 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2796 Ssu-Chr2 88859918 88862661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2796 25 884 Receptor kinase-like Gene Family AT1G62950 65.708 0.0 1107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Ssu2g2796 Pkinase 2.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2796 - - gmx:100800970 1567.75